RNA id: TCONS_00012698


Basic Information

Item Value
RNA id TCONS_00012698
length 1426
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_006565
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 20392656 ~ 20519001 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTATCGCCGCGATTTACATCTTTTTACCTCTGCTGGATGTGCTGTTATCTGCCGAGGAGTCTTACTTTTCTAGCTCTAACCGGCTGGACTGTGTGAAGGCGAACGAGCTGTGTTTGAAGGAGCCGGGATGCAGCTCAAAGTATCGAACTATGAGGCAGTGCGTGGCGGGGAGGGAGTCCAACTTCAGTATGGTGACTGGAATGGAGGCAAAGGATGAATGTCGACTTGTCTTGGACGCTTTAAAGCAGAGTCCTTTGTATAACTGCCGCTGCAAAAGAGGGATGAAGAAGGAAAAGAACTGCCTGCGCATCTACTGGGGGATCTATCAGCATTTACAGGGGAATGATTTACTTGAGGATTCTCCGTATGAGCCTGTGAACAGTCGGCTTTCAGATATATTTCGACTGGCTCCCATCTATTCAGGTGAGCCAGCGCTTGCAAAGGAGAACAACTGTCTGAATGCAGCAAAGGCCTGCAACCTGAATGACACCTGTAAGAAATACCGCTCTGCGTACATCAGCCCATGCACGAGCAGAGTCTCAACAGCTGAAGTCTGCAACAAGCGGAAGTGCCACAAAGCCCTGCGGCAGTTCTTTGACAAGGTGCCACCCAAACACAGCTATGGCATGCTGTACTGCTCCTGTCCTCTAGGGGACCAGTCAGCCTGTTCTGAGCGCAGGCGCCAAACCATCGTGCCAGCTTGTTCATATGAGGACAAGGAGAGACCCAACTGCTTGACACTGCAAGCTTCATGCAAGACCAACTACATCTGCAGGTCTCGTCTGGCAGATTTCTTCACTAACTGTCAGCCTGAGCCCCTCTCTCTGTCAGGTTGTTTGAAGGAGAATTACGCTGACTGCCTGCTGTCATACTCTGGGCTCATCGTTGTTGTGATTTTCCCGTTCTCCTATATTTCTCAGTGAAAAACAGCATGCAATTGCATACTGTAGCTGTATGTCTAGCTCTAATCTTTGTGGAGACTGCACATtgtatATGACAAATACTATCTTTGGTCTTTGTATAAAAGGTAACGCAATCCAGGCGTTTGGAAATGGGACAGATGTGAGCGTCTGGCATCCAATGCCCCCAGTACAAACCACCACCTCTATGACAACACCATCCCAAAGGGCCAGAGATAAAGATAGATCACCCAATGCCATAGAGCCGGCCACACACATCAACCATCTCAACCCGGCTGATAACTCCCTCTACCAGTTCTGTGGTAACATACAGgctcagaagaagaagacaaacaACACAATAGATGTGTTATGTGTGGATCCACAGATTGATGACCCCAGCTCCTCCAATACCATCTCCAAAAACTCATCCCCTCGGCAGATGACTCTATCAGGCCTTAGCTCTCAGCTGCTCCTACTGGCTACCTCCTTACATTGCATCTTCACCCCAGTGATGTTGTAG

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0007399 nervous system development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005515 protein binding molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010226-2 Enables MAP kinase kinase kinase activity. Acts upstream of or within enteric nervous system development and protein-containing complex assembly. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in nervous system; pleuroperitoneal region; presumptive enteric nervous system; and vagal neural crest. Orthologous to human GFRA1 (GDNF family receptor alpha 1).

Ensembl:

ensembl_id ENSDART00000165310

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012692 lncRNA downstream 592843 19797657 ~ 19799813 (-) True XLOC_006561
TCONS_00013478 lncRNA downstream 1035645 19350851 ~ 19357011 (-) False XLOC_006559
TCONS_00013477 lncRNA downstream 1035645 19350851 ~ 19357011 (-) True XLOC_006559
TCONS_00013476 lncRNA downstream 1053220 19338477 ~ 19339436 (-) True XLOC_006558
TCONS_00013475 lncRNA downstream 1115324 19276173 ~ 19277332 (-) True XLOC_006557
TCONS_00012702 lncRNA upstream 20881 20539513 ~ 20540669 (-) True XLOC_006566
TCONS_00013479 lncRNA upstream 211202 20729834 ~ 20731183 (-) False XLOC_006568
TCONS_00013776 lncRNA upstream 212323 20730955 ~ 20731888 (-) True XLOC_006568
TCONS_00013777 lncRNA upstream 558020 21076652 ~ 21079411 (-) True XLOC_006569
TCONS_00013778 lncRNA upstream 627482 21146114 ~ 21147382 (-) True XLOC_006570
TCONS_00012697 mRNA downstream 11171 20379392 ~ 20381485 (-) True XLOC_006564
TCONS_00012691 mRNA downstream 592832 19766896 ~ 19799824 (-) False XLOC_006561
TCONS_00012689 mRNA downstream 750368 19610562 ~ 19642288 (-) False XLOC_006560
TCONS_00012690 mRNA downstream 750417 19626990 ~ 19642239 (-) True XLOC_006560
TCONS_00012687 mRNA downstream 1528976 18801094 ~ 18863680 (-) False XLOC_006555
TCONS_00012700 mRNA upstream 16527 20535159 ~ 20540790 (-) False XLOC_006566
TCONS_00012704 mRNA upstream 1119822 21638454 ~ 21650404 (-) True XLOC_006571
TCONS_00012705 mRNA upstream 1138081 21656713 ~ 21660203 (-) True XLOC_006572
TCONS_00012706 mRNA upstream 1147889 21666521 ~ 21672131 (-) False XLOC_006573
TCONS_00012708 mRNA upstream 1164138 21682770 ~ 21688176 (-) True XLOC_006574
TCONS_00012696 other downstream 160906 20230139 ~ 20231750 (-) True XLOC_006563
TCONS_00012695 other downstream 160948 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012694 other downstream 170522 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012693 other downstream 170564 20217490 ~ 20222092 (-) False XLOC_006562
TCONS_00012685 other downstream 1677230 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012701 other upstream 17018 20535650 ~ 20540701 (-) False XLOC_006566
TCONS_00012703 other upstream 28335 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012721 other upstream 2321189 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012722 other upstream 2325198 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012723 other upstream 2325249 22843881 ~ 22847484 (-) True XLOC_006585

Expression Profile

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