RNA id: TCONS_00012701


Basic Information

Item Value
RNA id TCONS_00012701
length 903
RNA type nonsense_mediated_decay
GC content 0.38
exon number 6
gene id XLOC_006566
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 20535159 ~ 20540790 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGAGCTTTTAGCAGCAACACTAACAACATGGAATCTGCAACAATAGGCAGAAAATGGAAGCAGCTTTTGCTCTTTGCATTTCTCTCAACTTTAACTCATGGACAATCTCATTCTTCATGCCTTCCCGCTGACTTTTCTTTTGATCAGCTTGACAAACAGCTTCAGAACATAAAAAACTGTTTGGAAACTGTATCTGACAACTGGACGTCATACCAACACGGAAACATTCTTAATCAACTACAAGCATTAACTGATATCATTCAGAGGCAAGACAACAAAGCGTTTCAGAAGTTACTTCCAGAAAACTGTCCAGCTCCAGCAGTGCCTGAGAATGGAGGACTGCTGTGTTTATCTGTGAAGGATAAGATCTACTGGCTATGATTTCAATTTTCTTAGAAGATCAAGGCTGTTTGAGGAATGCAGTACTGCCACAAAACACACATGGACAACTCAGTACATTGGTGGCAACAGGCTGGCTATATGCAACAAGTCCCACATTGCGGTGTCAGGAGCCCCCTCTGCCTACTTTCCTCAAGGCGAGGACTGTCACATAACAAAGAGCAACGAACAACTAACGCAGAACATCACAAACATCTTTAAATCTGAGCTGGCTAAAGTGGAGACCACAGAATCAGAGTCTACCAAACTTCTCtgtggcaacatcaacaactaAATCTAAAATGTAGATCAAAAATGGTTTGGAAGATGTTTAGTGCTTGatgtaaaaatacaaatgaaccatgatgatttctcttttttcagatttatcaTGATTAAGCAAAAATGTTACCTTGAGGAAATTAGCGTGCAGCTGTAATgatgaaaaaaatcttattgatcataataattgaataataactAAAGTATCTTAGTTTAGGGCTAGTATTGACATAtagtacat

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4602 No description available

Ensembl:

ensembl_id ENSDART00000135535

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012692 lncRNA downstream 735837 19797657 ~ 19799813 (-) True XLOC_006561
TCONS_00013478 lncRNA downstream 1178639 19350851 ~ 19357011 (-) False XLOC_006559
TCONS_00013477 lncRNA downstream 1178639 19350851 ~ 19357011 (-) True XLOC_006559
TCONS_00013476 lncRNA downstream 1196214 19338477 ~ 19339436 (-) True XLOC_006558
TCONS_00013475 lncRNA downstream 1258318 19276173 ~ 19277332 (-) True XLOC_006557
TCONS_00013479 lncRNA upstream 189133 20729834 ~ 20731183 (-) False XLOC_006568
TCONS_00013776 lncRNA upstream 190254 20730955 ~ 20731888 (-) True XLOC_006568
TCONS_00013777 lncRNA upstream 535951 21076652 ~ 21079411 (-) True XLOC_006569
TCONS_00013778 lncRNA upstream 605413 21146114 ~ 21147382 (-) True XLOC_006570
TCONS_00012707 lncRNA upstream 1127648 21668349 ~ 21669960 (-) True XLOC_006573
TCONS_00012699 mRNA downstream 16649 20515692 ~ 20519001 (-) True XLOC_006565
TCONS_00012698 mRNA downstream 17018 20392656 ~ 20518632 (-) False XLOC_006565
TCONS_00012697 mRNA downstream 154165 20379392 ~ 20381485 (-) True XLOC_006564
TCONS_00012691 mRNA downstream 735826 19766896 ~ 19799824 (-) False XLOC_006561
TCONS_00012689 mRNA downstream 893362 19610562 ~ 19642288 (-) False XLOC_006560
TCONS_00012704 mRNA upstream 1097753 21638454 ~ 21650404 (-) True XLOC_006571
TCONS_00012705 mRNA upstream 1116012 21656713 ~ 21660203 (-) True XLOC_006572
TCONS_00012706 mRNA upstream 1125820 21666521 ~ 21672131 (-) False XLOC_006573
TCONS_00012708 mRNA upstream 1142069 21682770 ~ 21688176 (-) True XLOC_006574
TCONS_00012709 mRNA upstream 1148566 21689267 ~ 21701323 (-) True XLOC_006575
TCONS_00012696 other downstream 303900 20230139 ~ 20231750 (-) True XLOC_006563
TCONS_00012695 other downstream 303942 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012694 other downstream 313516 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012693 other downstream 313558 20217490 ~ 20222092 (-) False XLOC_006562
TCONS_00012685 other downstream 1820224 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012703 other upstream 6266 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012721 other upstream 2299120 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012722 other upstream 2303129 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012723 other upstream 2303180 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012725 other upstream 2315634 22856335 ~ 22858455 (-) True XLOC_006586

Expression Profile

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