RNA id: TCONS_00012711


Basic Information

Item Value
RNA id TCONS_00012711
length 845
lncRNA type antisense
GC content 0.44
exon number 3
gene id XLOC_006578
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22191361 ~ 22195168 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGAGAGAGCCTACATGTGGTGTCTATATCTtagtagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagaCGGATAGCAGTGACAGCACGCCATTGCTCTAAGCTGCATAATTCATGAGGAGACAGAGAGGAGGGCTTGTTATCTCATGCTAGAAGAGCAGGGGTGAGCTGCTCTGTGAATGCGGCAGACACATCCCTGACCCCGACACTGCACAGTCATCCTCCAACAACATTAACAGGCAGATAGACACAACAAACTTTCTGTGACATCAGGACATGGTGACGGCGATGATGATGGTGGcatatttttatcaatatttattaGcaattcatgtgacttcattctccatatgagagtcgtctttaagctgccaatAATTATCTTTGAACTTTGTCTGTTTTCCTAGTGCCCATGTCCTAAAGGTCCCTCTCTCTTCTCTCCAAAAAGCACGCTGTCTTTCTCCATCTAGCTCCTGCTGAGTTGTTCTAACATCCTTGTTCCAGAATTTTCCTTTTAATTTCCTTTCTATATCCTTGTTCGGTTCTTCCAGCTCTGTCCCAGTAATGGATTCAAAGAGGCAGAAAGAGTCCCCATCACACACACCCCCATCTCTGCAGCCTCTGTGACATCACAGATGTTTCCATAGCAACCGGCCTGCCTCCAGTACTCTTCTGTCTGCATCTACTTTTAAAGAGGTAAACCAGTATGGAGAGTGAGTGCTGGTCCTTTTGGAGGATTTAGAAGAGTGGGGTTAAACCCATTTTTGTCCACCATATGCCACTCATCTATGTATCGCATCAGTCATCATCGTGTcgttattgtttaaaaaaactaacaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000173368

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013480 lncRNA downstream 251396 21925701 ~ 21939965 (-) True XLOC_006577
TCONS_00012707 lncRNA downstream 521401 21668349 ~ 21669960 (-) True XLOC_006573
TCONS_00013778 lncRNA downstream 1043979 21146114 ~ 21147382 (-) True XLOC_006570
TCONS_00013777 lncRNA downstream 1111950 21076652 ~ 21079411 (-) True XLOC_006569
TCONS_00013776 lncRNA downstream 1459473 20730955 ~ 20731888 (-) True XLOC_006568
TCONS_00012713 lncRNA upstream 436049 22631217 ~ 22646134 (-) True XLOC_006579
TCONS_00012718 lncRNA upstream 582892 22778060 ~ 22784433 (-) True XLOC_006582
TCONS_00013779 lncRNA upstream 648662 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00012733 lncRNA upstream 855822 23050990 ~ 23051724 (-) True XLOC_006591
TCONS_00012735 lncRNA upstream 864349 23059517 ~ 23062293 (-) False XLOC_006592
TCONS_00012710 mRNA downstream 452219 21712284 ~ 21739142 (-) True XLOC_006576
TCONS_00012709 mRNA downstream 490038 21689267 ~ 21701323 (-) True XLOC_006575
TCONS_00012708 mRNA downstream 503185 21682770 ~ 21688176 (-) True XLOC_006574
TCONS_00012706 mRNA downstream 519230 21666521 ~ 21672131 (-) False XLOC_006573
TCONS_00012705 mRNA downstream 531158 21656713 ~ 21660203 (-) True XLOC_006572
TCONS_00012712 mRNA upstream 424516 22619684 ~ 22646134 (-) False XLOC_006579
TCONS_00012714 mRNA upstream 483916 22679084 ~ 22699024 (-) True XLOC_006580
TCONS_00012715 mRNA upstream 544870 22740038 ~ 22766445 (-) False XLOC_006581
TCONS_00012716 mRNA upstream 544870 22740038 ~ 22771708 (-) False XLOC_006581
TCONS_00012717 mRNA upstream 544870 22740038 ~ 22774491 (-) True XLOC_006581
TCONS_00012703 other downstream 1643863 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012701 other downstream 1650660 20535650 ~ 20540701 (-) False XLOC_006566
TCONS_00012696 other downstream 1959611 20230139 ~ 20231750 (-) True XLOC_006563
TCONS_00012695 other downstream 1959653 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012694 other downstream 1969227 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012721 other upstream 644653 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012722 other upstream 648662 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012723 other upstream 648713 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012725 other upstream 661167 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012744 other upstream 1293129 23488297 ~ 23513803 (-) False XLOC_006598