RNA id: TCONS_00012713


Basic Information

Item Value
RNA id TCONS_00012713
length 827
lncRNA type retained_intron
GC content 0.51
exon number 4
gene id XLOC_006579
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22619684 ~ 22646134 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACGCCAGCACTGAGCAACGGATTTACAACCACTTGTTGTCCTGGTGCTTTGTGCCAGTTGATGTGCGTTTTAAGGAGCACACAGATATGGTGGTGCTAAAGTTGTCTGTTCTTCTTCAGGGGCTGCTGCTCGTTGCCCGATGTGAGGTCCGAGCTAGAGACCCTGAGGTGGAGGATGAGGATGAGCTGAAGGATATGTCGGATGGTGGCGGATGGGACCCCAGAGTTCCATTGATTGGCTTTGGGGCAGCTCGTCATGGTGAAGTGATCAACAGAAAGAGACCTGACGTGTACGGAGCTCTTCATCATCCTGTTGGTCATCATGGACATCATGATCACGGTCACCAGGATGTGCCTGAGGGAACAGTGGACCCATCGTCAGCCACTGAGACCACAGGCTCTTTTCAGCGCACTGGGAATTGGTGTGCGTTTGTTCACAAGCAGGCTGTGACTGTGGCTGTAGCCTGTGGAACAGAGAAATACACCATCAAGTCCCAGAGTCCCTGTCCTAATGGCACCCCAGACTGTCAAGTCATCATGTACAAGCTGTCCACTCGGCCGGTGTACAGACAAAAGCAGAGAATCAACACTGCGCTGCAATGGCGATGCTGTCCTGGGCATTCTGGGGCAAACTGTGATGAGACAGTCACAGATGGACACATCTCTCAGTCTGAGACTGAAGACCCATCTCAGGCAGGCAGACCACATCCAGGAGGACCTGAAGAGACAGACAGACGTATGTGATACAAAACCTCTTTAAACTTTATATAAATTAAAGGTCTCATTTTTGCTAATGAATTGTGTAACAAGGGTGGCACATtggctc

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-080424-3 Is expressed in cardiovascular system; fin bud; floor plate; gut; and presumptive neural retina. Orthologous to human MMRN2 (multimerin 2).

Ensembl:

ensembl_id ENSDART00000131262

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012711 lncRNA downstream 436049 22191361 ~ 22195168 (-) True XLOC_006578
TCONS_00013480 lncRNA downstream 691252 21925701 ~ 21939965 (-) True XLOC_006577
TCONS_00012707 lncRNA downstream 961257 21668349 ~ 21669960 (-) True XLOC_006573
TCONS_00013778 lncRNA downstream 1483835 21146114 ~ 21147382 (-) True XLOC_006570
TCONS_00013777 lncRNA downstream 1551806 21076652 ~ 21079411 (-) True XLOC_006569
TCONS_00012718 lncRNA upstream 131926 22778060 ~ 22784433 (-) True XLOC_006582
TCONS_00013779 lncRNA upstream 197696 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00012733 lncRNA upstream 404856 23050990 ~ 23051724 (-) True XLOC_006591
TCONS_00012735 lncRNA upstream 413383 23059517 ~ 23062293 (-) False XLOC_006592
TCONS_00013780 lncRNA upstream 413383 23059517 ~ 23062531 (-) False XLOC_006592
TCONS_00012710 mRNA downstream 892075 21712284 ~ 21739142 (-) True XLOC_006576
TCONS_00012709 mRNA downstream 929894 21689267 ~ 21701323 (-) True XLOC_006575
TCONS_00012708 mRNA downstream 943041 21682770 ~ 21688176 (-) True XLOC_006574
TCONS_00012706 mRNA downstream 959086 21666521 ~ 21672131 (-) False XLOC_006573
TCONS_00012705 mRNA downstream 971014 21656713 ~ 21660203 (-) True XLOC_006572
TCONS_00012714 mRNA upstream 32950 22679084 ~ 22699024 (-) True XLOC_006580
TCONS_00012715 mRNA upstream 93904 22740038 ~ 22766445 (-) False XLOC_006581
TCONS_00012716 mRNA upstream 93904 22740038 ~ 22771708 (-) False XLOC_006581
TCONS_00012717 mRNA upstream 93904 22740038 ~ 22774491 (-) True XLOC_006581
TCONS_00012719 mRNA upstream 173351 22819485 ~ 22819667 (-) True XLOC_006583
TCONS_00012703 other downstream 2083719 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012701 other downstream 2090516 20535650 ~ 20540701 (-) False XLOC_006566
TCONS_00012696 other downstream 2399467 20230139 ~ 20231750 (-) True XLOC_006563
TCONS_00012695 other downstream 2399509 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012694 other downstream 2409083 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012721 other upstream 193687 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012722 other upstream 197696 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012723 other upstream 197747 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012725 other upstream 210201 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012744 other upstream 842163 23488297 ~ 23513803 (-) False XLOC_006598

Expression Profile

//