RNA id: TCONS_00012716


Basic Information

Item Value
RNA id TCONS_00012716
length 1818
RNA type mRNA
GC content 0.49
exon number 13
gene id XLOC_006581
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22740038 ~ 22774491 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGCCTAGGAGCCTTGGCGGAaaagttttcatttttctttctcctGTACCATGATTCTATCTTACCATTGTTTCAAGAACAAACAGTCAGCCCTCATCCCCTTTTTTTGTCGAGTCTCCTCCCCTGACTAGTTTGAGAACTATCCAGTTGGAGGAGGTTGGGAGCACTTCGGAACAAACCAAAGACCTATAGAGGGGTGATCTGGTGTGGCAAAGTTTTTAGTACTGTTCGTATGTCTGACTTTGGAATGCGGTGGTTTGAAGGAAGAGCTGGGTCACAGAGAGAGAGGCCATCACGACCAGTGTCTGAGTCTGATCCAGAGGTAGCTGAGCGATTGGCTCTGGGCAGCACTGAAACTCTGGCCAATGGCAACAAGGCTGATCTCCAAGCTGCAAAACGGCTGGCCAAACGCTTGTACACTCTTGATGGATTTAAGAAGTCAGATGTGGCACGGCACCTGAGCAAGAACAATGAGTTCAGTCACATGGTGGCGGAGGAGTACCTCAGTCATTTTAACTTCTCAGGGATGATGGTGGATCAGGCGCTGAGgGTGTTTTTAAAAGAGTTTGCTCTAATGGGAGAGACACAGGAGAGAGAACGAGTTCTGTCCCATTTCTCCAAAAGATACCTCCAGTGCAACCCGAAGACTATACCATATGAAGACAGTGTTCACACATTGACTTGTGCCCTGATGTTGCTCAACACTGATCTGCACGGTCATaaTGTGGGCAAGAGGATGTCCTGCATGCAGTTTATTGGTAACCTGCAAGGGCTGAATGATGGGCAGGACTTCCCAAAAGATCTTCTTAAGGCTCTCTACAACTCcatcaaaaatgaaaaactgcagtGGACAATCGATGAGGAAGAACTGCGGAAGTCTTTCTCTGAGATGGACGGCAGGAAAGACTCTGCATCGCACACTATGAAGCGGATCAGCAGCGGAGGAAACTCTCTGATCAGTGTTGCACAGCAGTCCAGTGCACAGGTCTATAAGAACGGCTTCCTCGTGCGCAAAGTCCATGCTGATCCTGATGGGAAGAAAActcCACGAGGTAAAAGAGGGTGGAAAACGTTTTACGCTATCTTAAAAGGACTGATTCTCTACCTACAAAAGGATGAATATCGTCCAGATAAGCAGCTGTCAGATGAAGACTTGAAAAATGCAGTATCAATCCATCATTCTCTAGCCATGCGGGCAGCAGACTATAGCAAGAGACCAAATGTGTTTTACCTGCGCACTGCTGACTGGAGAGTCTTTCTCTTCCAGGCACCGAACGCAGAGCAAATGCAGTCCTGGATTACTCGCATCAACACGGTGGCAGCCATGTTTTCTGCACCTCCATTCCCAGCAGCCATCGGCTCCCAAAAGAAGTTTAGCCGTCCTCTTCTGCCGGGCTCAAACACCAAGCTCTCACAGGAGGAGCAGCTCAAATCTCATGAAACACGTTTTCGGactgtttctgctgagctccagGAACTGCGCTCTACACCTCAAGACCGCAAGACCAAAAGCAGGGACCAAGAAGAATACAAGCAAAGGGAAGAGTATCTTGACTTTGAGAAAACACGTTACGGAACATATACAATGCTGCTGAGAACTAAGATCCGCATGGGAGAAACGGACCTGGCGGCATTTGAGGGCCGTTTGTTTGAGGACAGCGGTTTACAGAGGACCCACTCCAGCCCTACGTTACCCCAGGACATCAGCCATGCCAGCAGCACCAAAGAAACCAGCAGGAGCAGCAGCGGCAGCAGCAGGAGGACCAAACGCTCAGACTCTCAGAGACACAGCTTCAAACAGGCTGCCAAACAGTGA

Function

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-44 Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Orthologous to human PSD (pleckstrin and Sec7 domain containing).

Ensembl:

ensembl_id ENSDART00000112900

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012713 lncRNA downstream 93904 22631217 ~ 22646134 (-) True XLOC_006579
TCONS_00012711 lncRNA downstream 544870 22191361 ~ 22195168 (-) True XLOC_006578
TCONS_00013480 lncRNA downstream 800073 21925701 ~ 21939965 (-) True XLOC_006577
TCONS_00012707 lncRNA downstream 1070078 21668349 ~ 21669960 (-) True XLOC_006573
TCONS_00013778 lncRNA downstream 1592656 21146114 ~ 21147382 (-) True XLOC_006570
TCONS_00012718 lncRNA upstream 6352 22778060 ~ 22784433 (-) True XLOC_006582
TCONS_00013779 lncRNA upstream 72122 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00012733 lncRNA upstream 279282 23050990 ~ 23051724 (-) True XLOC_006591
TCONS_00012735 lncRNA upstream 287809 23059517 ~ 23062293 (-) False XLOC_006592
TCONS_00013780 lncRNA upstream 287809 23059517 ~ 23062531 (-) False XLOC_006592
TCONS_00012714 mRNA downstream 41014 22679084 ~ 22699024 (-) True XLOC_006580
TCONS_00012712 mRNA downstream 93904 22619684 ~ 22646134 (-) False XLOC_006579
TCONS_00012710 mRNA downstream 1000896 21712284 ~ 21739142 (-) True XLOC_006576
TCONS_00012709 mRNA downstream 1038715 21689267 ~ 21701323 (-) True XLOC_006575
TCONS_00012708 mRNA downstream 1051862 21682770 ~ 21688176 (-) True XLOC_006574
TCONS_00012719 mRNA upstream 47777 22819485 ~ 22819667 (-) True XLOC_006583
TCONS_00012720 mRNA upstream 68113 22839821 ~ 22843562 (-) False XLOC_006584
TCONS_00012724 mRNA upstream 78088 22849796 ~ 22862133 (-) False XLOC_006586
TCONS_00012726 mRNA upstream 104759 22876467 ~ 22903246 (-) False XLOC_006587
TCONS_00012727 mRNA upstream 104759 22876467 ~ 22907260 (-) True XLOC_006587
TCONS_00012703 other downstream 2192540 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012701 other downstream 2199337 20535650 ~ 20540701 (-) False XLOC_006566
TCONS_00012696 other downstream 2508288 20230139 ~ 20231750 (-) True XLOC_006563
TCONS_00012695 other downstream 2508330 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012694 other downstream 2517904 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012721 other upstream 68113 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012722 other upstream 72122 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012723 other upstream 72173 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012725 other upstream 84627 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012744 other upstream 716589 23488297 ~ 23513803 (-) False XLOC_006598

Expression Profile

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