RNA id: TCONS_00012725


Basic Information

Item Value
RNA id TCONS_00012725
length 574
RNA type processed_transcript
GC content 0.47
exon number 6
gene id XLOC_006586
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22849796 ~ 22862133 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggctcgcatgcggcagcgccggctcgctcggccacTGCATCTGGCttgattgactcggactggaatcgggcagtgagtccaggcatccggagtaggtccagcagagAAAACATCAACCCTGTTGTGGTGTTTGAGACTATGAGTGGGGAGCTTTACGTGCGTCGGCATGAAGACTCAATAATAATGGACTTCCCTTTAAACAAACCACAGCCGCAGGAACCACATGAAAACATGGATATTTTGAAGGCTGCTGTTGGAGATTTACCCATTGAGGACGTGTGCTACAGTCCAGCCATGAGGATACTGATGGTTCGTCTGGCTGACACATGTGACAGGTCTGAACTTATAACTTTGAGTCCCGTAGCAGAAGCTTTACTTAAAAGCGATTCCACTGGAAAAACAAAAGGTGTCCTTGTTACAATAAAAGGAACTTCAAATGCACAGCCTGGATATGACTTCTACTCCCGTTTATTTGCTCCATGGTTTGGAATCTTTGAAGATCCAGTTTGTGGGTCTGCACATACACTTCTTGCTGCCTACTGGTCTGAAAAGCTGAATAAAAAGAAATTGTTGG

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-456 Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Is expressed in myotome. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).

Ensembl:

ensembl_id ENSDART00000144449

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013779 lncRNA downstream 8851 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00012718 lncRNA downstream 71902 22778060 ~ 22784433 (-) True XLOC_006582
TCONS_00012713 lncRNA downstream 210201 22631217 ~ 22646134 (-) True XLOC_006579
TCONS_00012711 lncRNA downstream 661167 22191361 ~ 22195168 (-) True XLOC_006578
TCONS_00013480 lncRNA downstream 916370 21925701 ~ 21939965 (-) True XLOC_006577
TCONS_00012733 lncRNA upstream 192535 23050990 ~ 23051724 (-) True XLOC_006591
TCONS_00012735 lncRNA upstream 201062 23059517 ~ 23062293 (-) False XLOC_006592
TCONS_00013780 lncRNA upstream 201062 23059517 ~ 23062531 (-) False XLOC_006592
TCONS_00012736 lncRNA upstream 202769 23061224 ~ 23062531 (-) True XLOC_006592
TCONS_00013781 lncRNA upstream 354304 23212759 ~ 23217634 (-) False XLOC_006595
TCONS_00012720 mRNA downstream 12773 22839821 ~ 22843562 (-) False XLOC_006584
TCONS_00012719 mRNA downstream 36668 22819485 ~ 22819667 (-) True XLOC_006583
TCONS_00012717 mRNA downstream 81844 22740038 ~ 22774491 (-) True XLOC_006581
TCONS_00012716 mRNA downstream 84627 22740038 ~ 22771708 (-) False XLOC_006581
TCONS_00012715 mRNA downstream 89890 22740038 ~ 22766445 (-) False XLOC_006581
TCONS_00012726 mRNA upstream 18012 22876467 ~ 22903246 (-) False XLOC_006587
TCONS_00012727 mRNA upstream 18012 22876467 ~ 22907260 (-) True XLOC_006587
TCONS_00012728 mRNA upstream 65569 22924024 ~ 22961610 (-) False XLOC_006588
TCONS_00012729 mRNA upstream 72783 22931238 ~ 22961605 (-) True XLOC_006588
TCONS_00012730 mRNA upstream 114433 22972888 ~ 23007813 (-) True XLOC_006589
TCONS_00012723 other downstream 8851 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 11653 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 12530 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012703 other downstream 2308837 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012701 other downstream 2315634 20535650 ~ 20540701 (-) False XLOC_006566
TCONS_00012744 other upstream 629842 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012752 other upstream 1102837 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 1268608 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 1425215 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 2200278 25058733 ~ 25199225 (-) False XLOC_006628

Expression Profile

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