RNA id: TCONS_00012729


Basic Information

Item Value
RNA id TCONS_00012729
length 951
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_006588
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22924024 ~ 22961610 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAAACCATTGTCATTCATGTCGGTGCGGGAGTGATAATGGATCTCTGCTCTCTCAGGTAGACGATACGAAACAAACCAGGAAGTGTTTACAGGAACGCAGTTCGTGCCTTATATTAGTTTTAAACATGACCGGTGAAGTCCGATATTGCGAGAAGTGCTCGTACTTCTTCCTCAAGTTCTCGTTAATCGGATATGCAACAATTTTCTGGTTGATCGGGGGCTTTATATTGGCCATCGGTATTTATGCCGAGGTGGAGAGGCAACGATACAAAACATTGGAAGGAGTGTTTCTGGCTCCTGCCATCATCCTCATTGTGCTTGGTATCATCATGTTTATTGTTTCCTTCATCGGGGTTCTGGCATCTCTCAGAGACAACTTGTGCCTTCTCAAAGTGTTTCTTTACATGCTGGCTCTCTGTCTCGTTTTGGAGCTCGTCGGTGGGATCGTTGCTCTGATTTTTAAGAACCAGACAGTGGACATTCTCAACAAAAACATCCGTAAAGGCATGGTGAATTACTATGATGACCTTGATTTCAAAAACATCATGGACTTTGTTCAGAAAACGTTCAAATGTTGTGGAGGAACCGAGTACCAGGACTGGGAGGTTAACATGTATCATAACTGCTCTGCTCCTGGTCCACTGGCCTGTGCAGCTCCTTACACCTGCTGTATCGTCACGCCTGGAGAAGTTGTTAATACGATGTGCGGATACAAGACCCTGAATAAGGAGAGAAATGAAAATACAAACGTTATCTACATTCGTGGCTGTACCGACGCCGTCTTCATTTGGTTAATAGACAACTACAAAACAATGGCTGGACTTCTTCTAGGCATCTTTCTTCCGCAGGTAAGACTCATCAGAGATAAGGTGATGTAGATTCTCAGTGCAAGTCGTTTTTAATGATGCAAGTGgtacactttaaataaaatatactttgaCTTATCTTT

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0051604 protein maturation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050417-295 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN15 (tetraspanin 15).

Ensembl:

ensembl_id ENSDART00000143112

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013779 lncRNA downstream 83754 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00012718 lncRNA downstream 146805 22778060 ~ 22784433 (-) True XLOC_006582
TCONS_00012713 lncRNA downstream 285104 22631217 ~ 22646134 (-) True XLOC_006579
TCONS_00012711 lncRNA downstream 736070 22191361 ~ 22195168 (-) True XLOC_006578
TCONS_00013480 lncRNA downstream 991273 21925701 ~ 21939965 (-) True XLOC_006577
TCONS_00012733 lncRNA upstream 89385 23050990 ~ 23051724 (-) True XLOC_006591
TCONS_00012735 lncRNA upstream 97912 23059517 ~ 23062293 (-) False XLOC_006592
TCONS_00013780 lncRNA upstream 97912 23059517 ~ 23062531 (-) False XLOC_006592
TCONS_00012736 lncRNA upstream 99619 23061224 ~ 23062531 (-) True XLOC_006592
TCONS_00013781 lncRNA upstream 251154 23212759 ~ 23217634 (-) False XLOC_006595
TCONS_00012727 mRNA downstream 23978 22876467 ~ 22907260 (-) True XLOC_006587
TCONS_00012726 mRNA downstream 27992 22876467 ~ 22903246 (-) False XLOC_006587
TCONS_00012724 mRNA downstream 69105 22849796 ~ 22862133 (-) False XLOC_006586
TCONS_00012720 mRNA downstream 87676 22839821 ~ 22843562 (-) False XLOC_006584
TCONS_00012719 mRNA downstream 111571 22819485 ~ 22819667 (-) True XLOC_006583
TCONS_00012730 mRNA upstream 11283 22972888 ~ 23007813 (-) True XLOC_006589
TCONS_00012731 mRNA upstream 55893 23017498 ~ 23031803 (-) True XLOC_006590
TCONS_00012732 mRNA upstream 75980 23037585 ~ 23051766 (-) False XLOC_006591
TCONS_00012734 mRNA upstream 96663 23058268 ~ 23067381 (-) False XLOC_006592
TCONS_00012737 mRNA upstream 108976 23070581 ~ 23074454 (-) False XLOC_006593
TCONS_00012725 other downstream 72783 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012723 other downstream 83754 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 86556 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 87433 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012703 other downstream 2383740 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012744 other upstream 526692 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012752 other upstream 999687 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 1165458 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 1322065 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 2097128 25058733 ~ 25199225 (-) False XLOC_006628

Expression Profile

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