RNA id: TCONS_00012733


Basic Information

Item Value
RNA id TCONS_00012733
length 575
lncRNA type retained_intron
GC content 0.41
exon number 2
gene id XLOC_006591
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23037585 ~ 23051766 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTGACCTCCTTGTCATCACAGGCACTCTTGCTGTAGCTCTAAACAGTTTACCAGAATGAAGATTATAACGTTAATATTGTGACCTTCATTATTCTGTTTAGCTAACGTTATATGCGCATGATTAACAGAAACCTAAAATGTCGGTAAATCGTTGTATTTACTTATTGTCGCGCTCCCACATCCGATACCGGGTCTGTGCTAGCACAAACCTCTCTACTGTTTCTACACTAAGCACAACACAGCATTCAACAAGAAGGACATTTGACAAACTATCCACTAGACATTCATCATCAGGCTCGTCAAGACCGCTGGACACCTCACTGTTTATTCCGCTCGCCGTCAAAACAGATGAAGACGCGGAGGGATCAGTCGGCGCGGAGTTAACGAAGCCCCTGGATAAAAATGAGCTTCTCAAAGTGTTGAATAGATTCTACAAAAGGAAAGAGATGCAAAAACTGGCTTCTGACCAAGGACTTGACGGTAAGCATTGTGAACTTATGGTTGTTGTTACCTGAAAAGGTACAATTGAACACAAGAATTCAGCcatatgaagaagaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006401 RNA catabolic process biological_process
GO:0070827 chromatin maintenance biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0000958 mitochondrial mRNA catabolic process biological_process
GO:0000962 positive regulation of mitochondrial RNA catabolic process biological_process
GO:0000965 mitochondrial RNA 3'-end processing biological_process
GO:0001889 liver development biological_process
GO:0035945 mitochondrial ncRNA surveillance biological_process
GO:0035946 mitochondrial mRNA surveillance biological_process
GO:0030307 positive regulation of cell growth biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005634 nucleus cellular_component
GO:0042645 mitochondrial nucleoid cellular_component
GO:0045025 mitochondrial degradosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0034458 3'-5' RNA helicase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-2838 Predicted to enable helicase activity and nucleic acid binding activity. Acts upstream of or within liver development. Predicted to be located in mitochondrial matrix and nucleus. Predicted to be part of mitochondrial degradosome. Orthologous to human SUPV3L1 (Suv3 like RNA helicase).

Ensembl:

ensembl_id ENSDART00000125257

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013779 lncRNA downstream 203506 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00012718 lncRNA downstream 266557 22778060 ~ 22784433 (-) True XLOC_006582
TCONS_00012713 lncRNA downstream 404856 22631217 ~ 22646134 (-) True XLOC_006579
TCONS_00012711 lncRNA downstream 855822 22191361 ~ 22195168 (-) True XLOC_006578
TCONS_00013480 lncRNA downstream 1111025 21925701 ~ 21939965 (-) True XLOC_006577
TCONS_00012735 lncRNA upstream 7793 23059517 ~ 23062293 (-) False XLOC_006592
TCONS_00013780 lncRNA upstream 7793 23059517 ~ 23062531 (-) False XLOC_006592
TCONS_00012736 lncRNA upstream 9500 23061224 ~ 23062531 (-) True XLOC_006592
TCONS_00013781 lncRNA upstream 161035 23212759 ~ 23217634 (-) False XLOC_006595
TCONS_00013783 lncRNA upstream 161035 23212759 ~ 23217818 (-) False XLOC_006595
TCONS_00012731 mRNA downstream 19187 23017498 ~ 23031803 (-) True XLOC_006590
TCONS_00012730 mRNA downstream 43177 22972888 ~ 23007813 (-) True XLOC_006589
TCONS_00012728 mRNA downstream 89380 22924024 ~ 22961610 (-) False XLOC_006588
TCONS_00012729 mRNA downstream 89385 22931238 ~ 22961605 (-) True XLOC_006588
TCONS_00012727 mRNA downstream 143730 22876467 ~ 22907260 (-) True XLOC_006587
TCONS_00012734 mRNA upstream 6544 23058268 ~ 23067381 (-) False XLOC_006592
TCONS_00012737 mRNA upstream 18857 23070581 ~ 23074454 (-) False XLOC_006593
TCONS_00012738 mRNA upstream 20652 23072376 ~ 23074238 (-) True XLOC_006593
TCONS_00012739 mRNA upstream 32134 23083858 ~ 23095006 (-) True XLOC_006594
TCONS_00012740 mRNA upstream 182232 23233956 ~ 23270576 (-) False XLOC_006596
TCONS_00012725 other downstream 192535 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012723 other downstream 203506 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 206308 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 207185 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012703 other downstream 2503492 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012744 other upstream 436573 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012752 other upstream 909568 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 1075339 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 1231946 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 2007009 25058733 ~ 25199225 (-) False XLOC_006628

Expression Profile

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