RNA id: TCONS_00003156


Basic Information

Item Value
RNA id TCONS_00003156
length 2381
lncRNA type antisense_over
GC content 0.31
exon number 2
gene id XLOC_000632
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 50389319 ~ 50392789 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttaaaacagaaacaaataaagACTAAGCCAGGCCCATatggaaatctgatatatggctaTTTATGAACATATATATGAAACTGTAGCtaatatatatgaacacatatatacaaaatatgttgtaaatacccattttttgcaacattttgaaatatatatagatattttataTATGCGAAATACAAACATGTTTATTTAGCATATGTGATTTGCATATATTACCATATATCAAATTTCTACATGGCGGAAAGCAGACATTGAACACACATACAACATGAGCTCTGTGAAGGAACATGGcttgaaaataatttaatagaaataattctGCATGTGGATTTTCATATCTGCGctgtaaaaaactgaataaaacagaAAACACCATGCTATGACaagtaaaaaagtttaaaacaagtGTTTTATGCTACTTTATTCACGTCCCCCTCTGTTCTTTTTACCAATATATACATGATATACAACTTtttcttaaatacatttttgaaatttgttttttatttacaatataagagcttattagttttttttattttgtatttttttaatattctagCTAAAGCCGGTGTAGAGTTTTTACAGAGCAAAAGTATGGAGTATGATTCatgaagtcataaaagcatttGCACATTCACTGAACAGCATTCAATCTGTAAACAACTTTCCTCGATTATCAGAACTGATTTAGTATTTCTGATCTCATCTATGACTATTGCGCAAATCTAATGATCATATTCCTAACAAGAGGGTATCTTGAACATATATTCTTCGGTTTGGGTTTTATGCGTCACACAAGCAAACTCAAAAGTGCACTTTCAGAAGGGCAGATGTCTGAATTCTAGTCTACAaaaaccaaactaaaataaagGAAGTTAAAACGGCATTTTCATAACACGATGATAATGAACGAGACCCGATGTGTATTTATGCAGCAAAAATAAAACTTTGCTGtataaagcgattagttgactttaatcttaaaaaatgaattaaaaaatagcttttaaagtgataagttgactttactctaaaaaaaaaaaaaggagaaaacctgttgctttacaagcgattagttgagttaacATTATAAAAGAGAGTAATCTTGTTGCCTTAAAATGACTAGGGTTAACTGTCCATATTTACAAAAATTAAGCTTTCAAAAGTATTtcacttagatatgcttgacatttacagcaggtttggcatgctgtccagggagagaaccctgagcttggagatatttgagcccagggctcccgcccggtctagaagcatatcaggagatccgagatcaggtaggtctcgatcacTCCCCCTtcagaaggggagaaaaaggaggagatggggtggaaggggggattcttccaaaacgaagatagagcaataaggagaaagtgatctgTTTAtgttaagctaggatcattctgattggattattactgattacaaatgagTGGCCAgtggtgcacaatcatatcacgtgctccgctcgtaattagtttatgaaacttcacaagTCAACTCAACTTTTCCAAGATACTACAGatttttttagtgttttaaagCAATACGTTGACTTTATTCTAAAGAAAGTGAGAAAACCGGTTGCTTtaaaagccattagttgacttaacATAATAAAAGTGAGTAATCTCCATGCTTTAAAACGATGAAGTAAATAATCTGTGCATATTTATAGaaattaagttaagtcaactcaactGTTTCAAGATACATCTAATTTTCTCACTTTTTTTAGCAGTAAGTTAAGTTTACTCTAAAGAAAGTgagcaaacctgttgctttaCAAGCGATTAGTTGAGTAATatAATAAAAGTGTGTAATTTTGTTGCATTAAAATAATTAGGTAAATAaagtgtgcataattataaagaTTAAGTTAAGCCAACTCAACTGTTCCAAGATATATTCGATTTTTTCACTTTATCTAAGAGATTTTGGCTAAAGAAAATGAGAAAACTTGTtgctttaaaataagaaaataagaaatcttattgctttaaaagtgatttgTCGACTTAACATATAAAAAGTGAGTAATCCAGTTGCATTAAAAAAGATTAGGTTCAATTAACTACgtgcatatttataaaaattaagtcaactgaTCTGATCTGTCCcaacagattttctttttttattcttatttaagtaaaatcaacttgtcgcttttaataaaaacagtttttcagttctttttttaaaataaagtaactaaTCGCTCTTGATATTAAAGTGgttatgtaataaaaaatgtgCATGGAATATTTTTcttgacaaaacaaaaacaaatcagagCATTCAGATCCGAGAAGACACTAAAACCATCAATCCCAGCCCTCTACCA

Function

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0036477 somatodendritic compartment cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003154 lncRNA upstream 466493 49920790 ~ 49922873 (+) True XLOC_000628
TCONS_00003152 lncRNA upstream 614426 49699382 ~ 49774940 (+) False XLOC_000626
TCONS_00003153 lncRNA upstream 646139 49737400 ~ 49743227 (+) True XLOC_000626
TCONS_00003151 lncRNA upstream 675643 49699382 ~ 49713723 (+) False XLOC_000626
TCONS_00001065 lncRNA upstream 715362 49673489 ~ 49674004 (+) False XLOC_000624
TCONS_00003157 lncRNA downstream 135345 50528134 ~ 50531694 (+) True XLOC_000633
TCONS_00003158 lncRNA downstream 340367 50733156 ~ 50808448 (+) True XLOC_000637
TCONS_00001086 lncRNA downstream 528517 50921306 ~ 50924469 (+) True XLOC_000639
TCONS_00003159 lncRNA downstream 550803 50943592 ~ 50953558 (+) True XLOC_000640
TCONS_00001091 lncRNA downstream 584765 50977554 ~ 50983939 (+) False XLOC_000641
TCONS_00001080 mRNA upstream 69712 50293938 ~ 50319654 (+) True XLOC_000631
TCONS_00001075 mRNA upstream 201360 50085440 ~ 50188006 (+) False XLOC_000630
TCONS_00001081 mRNA downstream 146050 50538839 ~ 50557030 (+) True XLOC_000634
TCONS_00001082 mRNA downstream 221079 50613868 ~ 50637221 (+) True XLOC_000635
TCONS_00001083 mRNA downstream 246627 50639416 ~ 50691538 (+) True XLOC_000636
TCONS_00001085 mRNA downstream 528477 50921266 ~ 50929957 (+) False XLOC_000639
TCONS_00001087 mRNA downstream 576119 50968908 ~ 50983855 (+) False XLOC_000641
TCONS_00001079 other upstream 257357 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001068 other upstream 673544 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001057 other upstream 798543 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001054 other upstream 917041 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001047 other upstream 2475157 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001084 other downstream 461575 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001097 other downstream 673993 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001111 other downstream 1072679 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001119 other downstream 1290730 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001126 other downstream 1737375 52130164 ~ 52135502 (+) False XLOC_000662

Expression Profile

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