RNA id: TCONS_00012735


Basic Information

Item Value
RNA id TCONS_00012735
length 514
lncRNA type retained_intron
GC content 0.42
exon number 3
gene id XLOC_006592
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23058268 ~ 23067381 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATCATCTCAAAGATGTTATTGTGGGTAAAATCTATTTCTTGCTGGTACGGATTAAAATCCAACACATGGAGCTGCAGCTGATCAAGAAAGAAATGACAGGAATAGGGCCGAGCACGACTACTGAGACAGAGACTGTTGCTAAATATGAGATTATGGATGGAGCACCAGTCAAGGGCGAATCCATTCCTATCCGACTTTTCCTGGCTGGCTATGACCTTACACCCACAATGAGAGACGTAAACAAGAAGTTCTCTGTGAGGTACTTTCTGAACTTGGTGCTTGTGGATGAAGAAGATAGAAGATACTTCAAACAGCAGGTCTAGTGTTTTTGATGAAAATATCATGTTCCATTGCACTTACAGTGTCTTATTAGACACAAAGAAGTGATATAAATGaattctgtcttttttttgtgtgtgtaggaAATAGTTTTGTGGAGGAAGGCACCGGAGAAAATGCGGAAAAGGAATTTCCATCAGCGCTACGAGTCGCCTGAGCCCCGGCCGAGTCTCT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0030904 retromer complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1108 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in early endosome and endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26A (VPS26, retromer complex component A).

Ensembl:

ensembl_id ENSDART00000136621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012733 lncRNA downstream 7793 23050990 ~ 23051724 (-) True XLOC_006591
TCONS_00013779 lncRNA downstream 212033 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00012718 lncRNA downstream 275084 22778060 ~ 22784433 (-) True XLOC_006582
TCONS_00012713 lncRNA downstream 413383 22631217 ~ 22646134 (-) True XLOC_006579
TCONS_00012711 lncRNA downstream 864349 22191361 ~ 22195168 (-) True XLOC_006578
TCONS_00013781 lncRNA upstream 150466 23212759 ~ 23217634 (-) False XLOC_006595
TCONS_00013783 lncRNA upstream 150466 23212759 ~ 23217818 (-) False XLOC_006595
TCONS_00013782 lncRNA upstream 150466 23212759 ~ 23217818 (-) True XLOC_006595
TCONS_00013784 lncRNA upstream 345736 23408029 ~ 23411631 (-) False XLOC_006597
TCONS_00013785 lncRNA upstream 346376 23408669 ~ 23410559 (-) True XLOC_006597
TCONS_00012732 mRNA downstream 7751 23037585 ~ 23051766 (-) False XLOC_006591
TCONS_00012731 mRNA downstream 27714 23017498 ~ 23031803 (-) True XLOC_006590
TCONS_00012730 mRNA downstream 51704 22972888 ~ 23007813 (-) True XLOC_006589
TCONS_00012728 mRNA downstream 97907 22924024 ~ 22961610 (-) False XLOC_006588
TCONS_00012729 mRNA downstream 97912 22931238 ~ 22961605 (-) True XLOC_006588
TCONS_00012737 mRNA upstream 8288 23070581 ~ 23074454 (-) False XLOC_006593
TCONS_00012738 mRNA upstream 10083 23072376 ~ 23074238 (-) True XLOC_006593
TCONS_00012739 mRNA upstream 21565 23083858 ~ 23095006 (-) True XLOC_006594
TCONS_00012740 mRNA upstream 171663 23233956 ~ 23270576 (-) False XLOC_006596
TCONS_00012741 mRNA upstream 172611 23234904 ~ 23264724 (-) True XLOC_006596
TCONS_00012725 other downstream 201062 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012723 other downstream 212033 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 214835 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 215712 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012703 other downstream 2512019 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012744 other upstream 426004 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012752 other upstream 898999 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 1064770 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 1221377 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 1996440 25058733 ~ 25199225 (-) False XLOC_006628

Expression Profile

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