RNA id: TCONS_00013781


Basic Information

Item Value
RNA id TCONS_00013781
length 4585
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_006595
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23212759 ~ 23217818 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTATGCAACATTTCTGACATCTTGTAATTTTGACTTATGTTCTATTATAATGTTAGTTTGTCTCATAATTCTGGCTTTACACCTGATCATTCTTATTTTACACCCAATAAGTATAATTATGACTTTTACAGCTCATAATTCTGCCCTGAAACCCACATACTGCATTACTGACTTACACCTGATCATTCTGATTTTACAACTCTTTACAACTCAATTCTGGCTTTACATTTGATAATTCTGGCTTTACATCTCATATTTTGACTTAAAACCACGTAATACTGACTTACACCTGATAATTCTGATTTTgcatctcataattctgacttcataccTTAGAATTCTGACTTAAAACCACATAATACAGACTTACATCTGATCATTTTAACTTTACacctcaaaattctgactttacatctgaTAATTACAGCTTTATACCTCAGAATCCTGACATTAtaccttataattctgacttaaaaccCACATAATACAGATAAACacctgataattctgactttacatcggataattctgactttacatctgaTAGTTCTGGCTTTATATCTCAGAATTctgatttaaaaacaacataatacTGACATACACCTGATAATACTGACTTTATatctgataattctgactttacaccTCATAATTCTGTCTTAAAACCATGTAACACTGACTTACACCTCATATTTTGCACATAAGACCTGATAATTCTATACACTTCATAATTTTGGTTTTCCAACTGATAATTCTGGCTTTACacctaataattctggctttacATCTGATAATTCTGGCTTTACATCTGATAATTCTGGCTTTACATCTGATAATTCTGGTTTTACACctcataattttgaccttgagtttcataattataattcagaaTTTTACACCTGATAATTCTGCCTCAAAACCACATAATACTGATTTATGCCTGATAATTATGCCTTTATAGCTGATAATTCTGATTATATGTCAGATCATTCTGGCTTTCAACTTCAGAATTTTGACTTTACACCTCATAATTCTCATTAATATCCAAATATGTATCATTACATTTTAAGATGACATCATGTAATTccaattttatttctgttttctttgtaagcTACTTTATGTTCAAGTTTATAATTTTACAGTGCTATTTTGAGTAGAAatctacatttaaaaagaaaaagttaaataaaaatgcaaatatctTTTTTATTCTATGGCAGTAATAAGCTTTCTTAACAGTCTTTACAGAATCTGAATCTGTTcattttcatcattcattttcaatcAACACAGATGACATCATAGAAAAAGCAGTATGTCTGTCTAAAAAGCAATTATGGCTTGCAATGTAATTTACCGTGAATGAGTTggcattcatgttgttgtcttggATGTCAAACAGCATGACAGGACTTCTTGAAGATCTCCCATAATATTCTACATCATTTCTTAATGGCTGTGGAGGAAAATAACATGTATTAGCtattgctttaaaaacaactgcCTGTGCTTAACAGGTGTCATTTGATCAGCTTAGTATCATTTTCCTCTGAGCAGTTGATTCCAGCACAACCTTACAGTACTGTATATACAAACGCAAGGACCGAAATAAGATTGTGAGTTAGTAGCAATCACCAATTTTCATtgcaatcacaaacacacaagttAAAACAGTGTCATGTCATGCCGGAAAGCTTCAGGTGGAAACACTATATAGTCTATAAAATAGCTTATAACACTTATAACAACAGCTAGACAGTAATATCAACAAACTATCTTTTATCCcataataaatatgatttaacagttatacattttaaatattttataaaaccttacaaaaaagatatttttcaatatatgaatattatatataGACATTACAAAAAGTAGACAAGTATTAGAGGCATGTTTAGGGGTAATGAATGCATTTTAAGTCTGCTTTggcattttttctatttttttccatttttttctattttactgAAGATGGATTAATATTTGGGTTCGAGGAATATATAAATTTGCTATTTTTTATACTCTATATAATTTATAGGCCTTAAAAAAGATGTTAAATTGACAATCTTAGTTTATTATTCTTCAGTTGTTCTTTAACAATTGTAGATTTATGTATCTACATTTGTATGAAAAAGTTCTTAGTGTATTGCTTtgttatacactgaaaaaaagatttctggCAAATTGTTGCGAAAAATGTACATGGGTTGAGTTTaaacaaattcattttaataattttcaacttaatttgtttctttaaattcagcccaaataaattgtttgcaaccagttaatctaaaaaaaaaaaaaaatccaggaaatcatctttgaatattttttcagtgtatatacaGAACAtggtgtatatactgtacatgttcagttaacaaatgttttaaacaattttaattgcAAAAGCATGATAAAGTACAaattgtaacactttacaatgcgttagttaatgcattaaaatcaacaatgataaataatattataaagttaatttaaaaaaaacaacaactaagtTTTAGTAGTTATTAACTccttttaattaaagaattacaatttttgtttttaatgtaataaggCATTAACCTAAGAAATTAACTTTAGCTATAGGACAAAGTAATTTAAAGATTAAGATTAATTCAtaaaattcattggtgttaacaAATATAACAGAGAACAAGCAAAATGCCAAGAAATAATCCCATAATTTTCAAAGTTGTAAGTTAGATTAACgtgaaaatgttcatgtttgaAAATAAACCGACTATTAAGTCTTGACCATTTGGTTCTGATAAACAATAACTGAAATGCAAATATTCTTAAAACTCATGCATGCTGTAATTTTATGACAACACAAAAAACCAACACACAAGCAGCATTCACATTAGAGTTCCATGCAATTGTTCCTTATCAACTGTGTTACCCCTCAAAAGTGTGCTTACTAACTCATTAGcacaaccacatcattccctaATTCACCCTATTAGATCTGCAACGTGTGCCAGTGTAAAACAGCATCCGCCCTTGCACTTGAGCACCACATGATGGCACCctgaacaaacacagcacaccaTGCAGAAGATACCTCTGCTGGACTATTGTTCCTGCTGTAAGGAGCCTTGCGGAGGCTTCCAACCCTGTCTATTTCAGCCCCTTCCCCTTCCTGAAACTCCTGATCCAGCTTGTTTGCCCCAGAGAGCCAACCCTCAAGCCCAGCACCACCACAGGGGCTCAGGCTGCGGGACAGACGGGGGGAGGGTGGAGAAAGAAGGAAGTCCTCGCCTTGAGGTGGAGTGAATGTGAGGAACGGGGTGGCTGAGCAGGGACGGGGTGGATAGGGTGGCGGTAAAGGAGACGTGGAGGGGGAAGCCATTGGGGAGACACAGTAGGGGCTGCCGCTGATGGGAGGCACAGGACTGGCTGACATAGACGGGGGCAGATATTCGCCAAGGCGGTAGGAGTTGGTTGGCAGGGGTGGCAGGGGTGGAGTTGGCGCAGCCGGAGGGCTGCTGCTCACCCCACCCACAGTCAGAGAGATCCACTCATTGGAGATGGCATGGACCTCAGGGGAAATGGAGCGGCGAGGGGAGCGGGGCAGAGGGAGAGGGGACGTGGTGAGACGATTACGAATGGGCTTTTTGGAGGACGTCAGGAGGAATGAGAAGAAAGAAGAGGAAGGAGGAAAGGGAAAAGGAGAAATGGTGAAAAAAATCAATGCAAACTAGAGATGCACCGATCTACTGGATAAAAATCAGGTTCAGATGtttgctgttgttttgtttacaaaCTGTGATCCCTAACTGATGAATGTTTTTGTATTTCTGTTGCAAACTGCACTGCAATGATTTTATAGTATATTGGAGCATGGTTTATAGTAGACAGAACATTAAAAGAGGCAGAGATTGTGCATAGATGTACCAACAGATATACTCATCTGTCCTGTATGATACTTATTCTCTACTGCACTATACTCCAGTGCAGCTGGAGTTTTTACTGCTTCTCCATAAGCACCACCTACAGGCAGAGATTGGATTTGCATTTCTATTCTAGCCTGTGTTCTGTTTTTGCTTTGTACAGGTTTGTTAGATTATTATGTTTTTCATtgtatttaaactattataaatgtaatccaagataaaaataaattgatcaaTTTGCTTGCATAATTCCGATTAAAAAAGCAATTCGGCAATCTGAATTggtcataaaaaaaatcaagatcgGTGCATCTCTAAAACAAACAATAgggaaaatgaaaactgaaagttGAAAGGAGATGATACGAGGGCTCTGTATTTCTTAAGTGTTTTTACCTGTGGAGAAGCGTTAGTGCTGCGATGAGGTGAATAGCTTATAGGGGCATCAGGATAGTCCACTCCGTTTTTCACTCGGGGCCTCTTGTGCACCTCTATGTAGGTGACTGGAAAGATACCCTGCCGGTTTGTGCCAGAAATCTTGCCTTCATACCAGTTCTCATCTACTCTGCGAATTAGTGTTATACGCTCCCCCTAAAGAAAGATGAAAGATTTTGAAGTAGTTCATGCAGATCTGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013780 lncRNA downstream 150228 23059517 ~ 23062531 (-) False XLOC_006592
TCONS_00012736 lncRNA downstream 150228 23061224 ~ 23062531 (-) True XLOC_006592
TCONS_00012735 lncRNA downstream 150466 23059517 ~ 23062293 (-) False XLOC_006592
TCONS_00012733 lncRNA downstream 161035 23050990 ~ 23051724 (-) True XLOC_006591
TCONS_00013779 lncRNA downstream 365275 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00013784 lncRNA upstream 190395 23408029 ~ 23411631 (-) False XLOC_006597
TCONS_00013785 lncRNA upstream 191035 23408669 ~ 23410559 (-) True XLOC_006597
TCONS_00013481 lncRNA upstream 1129355 24346989 ~ 24351543 (-) True XLOC_006611
TCONS_00013786 lncRNA upstream 1355452 24573086 ~ 24574746 (-) True XLOC_006616
TCONS_00013787 lncRNA upstream 1359631 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00012739 mRNA downstream 117753 23083858 ~ 23095006 (-) True XLOC_006594
TCONS_00012737 mRNA downstream 138305 23070581 ~ 23074454 (-) False XLOC_006593
TCONS_00012738 mRNA downstream 138521 23072376 ~ 23074238 (-) True XLOC_006593
TCONS_00012734 mRNA downstream 145378 23058268 ~ 23067381 (-) False XLOC_006592
TCONS_00012732 mRNA downstream 160993 23037585 ~ 23051766 (-) False XLOC_006591
TCONS_00012740 mRNA upstream 16322 23233956 ~ 23270576 (-) False XLOC_006596
TCONS_00012741 mRNA upstream 17270 23234904 ~ 23264724 (-) True XLOC_006596
TCONS_00012742 mRNA upstream 270648 23488282 ~ 23612324 (-) False XLOC_006598
TCONS_00012743 mRNA upstream 270648 23488282 ~ 23612369 (-) False XLOC_006598
TCONS_00012745 mRNA upstream 389059 23606693 ~ 23611960 (-) True XLOC_006598
TCONS_00012725 other downstream 354304 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012723 other downstream 365275 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 368077 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 368954 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012703 other downstream 2665261 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012744 other upstream 270663 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012752 other upstream 743658 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 909429 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 1066036 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 1841099 25058733 ~ 25199225 (-) False XLOC_006628

Expression Profile

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