RNA id: TCONS_00013785


Basic Information

Item Value
RNA id TCONS_00013785
length 905
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_006597
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23408029 ~ 23411631 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacaaagtAGTGCACTGAAAtgacagttttattatttttttaagcaaaaatgcatgtaaaatctTAATTGTAAAATATAGAGACCGTTCTGTGCAAACCTCTGATTGGTTTCAGGGACATACTTTGAATCCGACAGACAGATGTTGTTTCATTGGTACAGTCATAAGGAAATTGAATTTTAAAATTCAGTCTGAGCTGCGCTGATAACCTCAAGGGCACTTAGACAATGTTAAAATGCCACTTACAAAAACATGATTGGATGTGTTGAAATTTTCACTGCAAGGAGAAAAAGCACATTTAGCCGAGGCACTCCCAAGCATTAATGAGAAtgtgtttgtcataaaaaaaCTGGGGCTGGATTTTCATTACATACAACAAGCCATTGTGTGAAATTCACAAGTCTCtgtacgtgctgactgacagatAAATAATTTTTTGAAGCCTCAGGCTTTGACAGCACAGGTTCTGATGAGTAATATGTGCTGTATTTTCACACTGCTTGTAATGACATACGCAAAGCAAACTGAGTCATATGCTCACAGATGTCACAGTGGCAGAAAGCACAGAAACAAGCTGCTTTATAACTCcgaaaaaacacaagcaaaactGTTTGTGCGGAATAAAGAAATGTATGTATTTGCTTGCATGTGGTCGCATTTAGTTCAAGATTGAATTCATCATGTTAAACCTTCCCATGTAGCATTGAGGTGACACTTCATCTACAACAGCCATTTAATCCAATCATGTATCTTTTTGTGTCCTGTGGGATAAAAAGATTAAGCAGAAATAGGGTATACTGTATGACCAAAAATGCAAGACTTTAGCATTATGAGTGAGAAGGATTTAGCTGTTATTTTAAACAACGTTAGGATCAACACAGCCTTATATTACACCACAATGTGTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013783 lncRNA downstream 190851 23212759 ~ 23217818 (-) False XLOC_006595
TCONS_00013782 lncRNA downstream 190851 23212759 ~ 23217818 (-) True XLOC_006595
TCONS_00013781 lncRNA downstream 191035 23212759 ~ 23217634 (-) False XLOC_006595
TCONS_00013780 lncRNA downstream 346138 23059517 ~ 23062531 (-) False XLOC_006592
TCONS_00013481 lncRNA upstream 936430 24346989 ~ 24351543 (-) True XLOC_006611
TCONS_00013786 lncRNA upstream 1162527 24573086 ~ 24574746 (-) True XLOC_006616
TCONS_00013787 lncRNA upstream 1166706 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00012770 lncRNA upstream 1174665 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013788 lncRNA upstream 1179861 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012740 mRNA downstream 138093 23233956 ~ 23270576 (-) False XLOC_006596
TCONS_00012741 mRNA downstream 143945 23234904 ~ 23264724 (-) True XLOC_006596
TCONS_00012739 mRNA downstream 313663 23083858 ~ 23095006 (-) True XLOC_006594
TCONS_00012737 mRNA downstream 334215 23070581 ~ 23074454 (-) False XLOC_006593
TCONS_00012738 mRNA downstream 334431 23072376 ~ 23074238 (-) True XLOC_006593
TCONS_00012742 mRNA upstream 77723 23488282 ~ 23612324 (-) False XLOC_006598
TCONS_00012743 mRNA upstream 77723 23488282 ~ 23612369 (-) False XLOC_006598
TCONS_00012745 mRNA upstream 196134 23606693 ~ 23611960 (-) True XLOC_006598
TCONS_00012746 mRNA upstream 224258 23634817 ~ 23665580 (-) False XLOC_006599
TCONS_00012748 mRNA upstream 224489 23635048 ~ 23666579 (-) False XLOC_006599
TCONS_00012725 other downstream 550214 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012723 other downstream 561185 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 563987 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 564864 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012703 other downstream 2861171 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012744 other upstream 77738 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012752 other upstream 550733 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 716504 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 873111 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 1648174 25058733 ~ 25199225 (-) False XLOC_006628