RNA id: TCONS_00012742


Basic Information

Item Value
RNA id TCONS_00012742
length 2062
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_006598
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23488282 ~ 23612369 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGGTTTGTTGTTCTCTGGCAGTAACGTGTAAAAATTCTGTATACATCCAGCTTTTGTTTATACACCTAACGCTAATATCATTACCATGTTTAAGTGTGTAACGTTAAACACCCGCGAGGACTTTGCTGACATAAAGCAACATATATTACCTGCGTATAATGAACTACGTTAGCTTTTAACTTAGCATTGTTCTAGTTACACACATTAATAATCTGTCACAAAAGCTGTACTGCGTACTTATGTTATTTAAGTATTGTTACAAGTCTGGATTATTTAATGTTGTTCGGATCATGAATTATTTCAGTTGTAGCACTTTTTTAAAGCTTAAACTATAGCCCTATAACGTTATCTCTGTTGTGTAGGTTTAAAATGCAGTTTTCAGGCAGAAGGAAGAAGCTGATCAGCAGCTCTCAGAGTGATCTGTATGATCACTGTCTGCAGTTTTATGGTCAGCCTCCTCTGGACAACATCTCCCTcatcgagtttgagacctttgCAGTTGAGAGACTGAAATTGCTCAAAACTGTGGAAAACCTTGGAGTGAGCTAtgtgaaaactacagaccagtacaTCAAAAAACTGGAAGCTGAGTTTTTAAGCCTGAACTTTCCATTCAGGGCAGAAGTGGATGACCGAAAGGTTCCAGGAGTAACATCTGAATATGAGAAACGAAGAAAAGACCATATCTCCCATTTTATTCTCCGCTTGGCTTATTGCCAAACGGAGGACCTTAGGCGATGGTTTATCCAGCAGGAAATGGATCTTTTTCGTTACAGGTTCGGGATTCTTTCTTCAAAGCACAAGACTGAGTTTTTGCATAAGAATAATTTGAAGTATGAGACGGTTAGTGCAGAGGAAAAGAAATACCTAAGAGACAAGCTCATCAACTCCAGTTATGGATTAAGTGGAATCACACTAGAAGAATATGATTTCTACAGAGTCCCATTTCAGGATGCCCTGGATTTAGTGCGCACAAGGAAAGTCTACTTATTGGCTGGCAATGCTTACATTCCCCAAAATGAAATTGTCACCATTGTCCTGAATGACTTCCGCACAAGATTGTCCAAAGCACTTGCGgtGACTGCTCGATCTCTGCCAGCCGTACAGTCTGATGAACGCCTCCAGCCTCTTTTGAGCCACCTCAGCCATGCTTATGTGGGTCAGGATTACAGCAttcagaaaaatgttggaaagatTTCTCTGGAGCAAATTGATCCACTCTCAGGCAAGTCGTTTCCTCTATGTATGAGGCATCTCCACAAGGCACTGAGGGAGAACCACCACCTGCGGCACGGTGGACGCATGCAGTACGGCCTCTTCCTCAAGGGCATTGGTCTTACTCTGGAACAGGCCATGCAGTTCTGGAGGTCAGAGTTTGTCAAGGGGAAAGTTGATGCAGACAAGTTTGATAAAGCATATGCCTACAGCATCCGCCACATGTTTGGGAAGGAAGGCAAGCGCACTGACTACACCCCCTACAGTTGCATGAAGGTGATTTTGTCAAACCCACCCAGCCAAGGCGACTACCATGGGTGTCCATTCCGCCACAGCGACCCTGAACTGTTGAAACAGAAGTTGCAGTCTTATAAAATCGCTCCTGGTGGGATCAATCAGATTCTAGAGCTGGTCAAGGGAATGCACTATCAGCTGGCCTGCCAGAAGTACTTTGAGCTGACACACAGTGTTGAGGATGCTGGGTTTTCTCTCAATCATCCAAACCAGTACTTCACAGAGAGCCAGAAGCTTCTGGGTGGAGGCCAAGGCATCAAGAAAGAAGTGGAGATGTCACAAAAAAGCCAAGAAAATCCTCCCGGTGCGTCCCGTCCATCTCAGGCAAACCCTAAACAGGCCCAAGAGGAGATGGGGGATTTAGACTCCTTCTTCCAGGATGAATGATTTTGTAGAACCTAAGGAAAATACAGGGCTCTTACTTGTATTCACTGTTTAAGACACAATTGTCTTTTCACCATTAAAAAACTTTCATATCTGTTTTTTTACCTTGTCTTTATATTGATAAGATTCTTCTCAAAttacatgtttttaccaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-471 Predicted to enable 4 iron, 4 sulfur cluster binding activity; DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within DNA replication, synthesis of RNA primer. Predicted to be part of alpha DNA polymerase:primase complex. Orthologous to human PRIM2 (DNA primase subunit 2).

Ensembl:

ensembl_id ENSDART00000136406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013784 lncRNA downstream 76651 23408029 ~ 23411631 (-) False XLOC_006597
TCONS_00013785 lncRNA downstream 77723 23408669 ~ 23410559 (-) True XLOC_006597
TCONS_00013783 lncRNA downstream 270464 23212759 ~ 23217818 (-) False XLOC_006595
TCONS_00013782 lncRNA downstream 270464 23212759 ~ 23217818 (-) True XLOC_006595
TCONS_00013781 lncRNA downstream 270648 23212759 ~ 23217634 (-) False XLOC_006595
TCONS_00013481 lncRNA upstream 734665 24346989 ~ 24351543 (-) True XLOC_006611
TCONS_00013786 lncRNA upstream 960762 24573086 ~ 24574746 (-) True XLOC_006616
TCONS_00013787 lncRNA upstream 964941 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00012770 lncRNA upstream 972900 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013788 lncRNA upstream 978096 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012740 mRNA downstream 217706 23233956 ~ 23270576 (-) False XLOC_006596
TCONS_00012741 mRNA downstream 223558 23234904 ~ 23264724 (-) True XLOC_006596
TCONS_00012739 mRNA downstream 393276 23083858 ~ 23095006 (-) True XLOC_006594
TCONS_00012737 mRNA downstream 413828 23070581 ~ 23074454 (-) False XLOC_006593
TCONS_00012738 mRNA downstream 414044 23072376 ~ 23074238 (-) True XLOC_006593
TCONS_00012746 mRNA upstream 22493 23634817 ~ 23665580 (-) False XLOC_006599
TCONS_00012748 mRNA upstream 22724 23635048 ~ 23666579 (-) False XLOC_006599
TCONS_00012747 mRNA upstream 22724 23635048 ~ 23666579 (-) True XLOC_006599
TCONS_00012749 mRNA upstream 115852 23728176 ~ 23756700 (-) True XLOC_006600
TCONS_00012750 mRNA upstream 307156 23919480 ~ 23956178 (-) False XLOC_006601
TCONS_00012725 other downstream 629827 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012723 other downstream 640798 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 643600 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 644477 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012703 other downstream 2940784 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012752 other upstream 348968 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 514739 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 671346 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 1446409 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 1579252 25191576 ~ 25198063 (-) True XLOC_006628

Expression Profile

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