RNA id: CI01000000_01879407_01879559.mRNA



Basic Information


Item Value
RNA id CI01000000_01879407_01879559.mRNA
length 574
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000000_01879407_01879559
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1879407 ~ 1879980 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCAGGCCTATGTGCTCTGGGCACCTGCTGCTTTGTTGGCTTTTTCCACACGGATTACCGGAGACTCCGTGCGGAAGCCACAGCCTCACCAAAGACAGTGACAGACCAGTCAACAGGAGGAGACACCTGGGCAAACAGCACAGATGCATAAAGAGACGAGCTGATCTAACAAGGAGAGAAACCACTGATGACAGTGTTTACGCACACTTTAAAAAGACTTTTACCTCATTTACACTGAAAGGATGTGCCTTAAATGCTAGTTTGTTTTACTTAGAAGTGGTACTACCTCAACCTCCATTAATGTTACATAAAACCTCGTTATGCACAAAAGCATTTGTTTCTGTTAAAGAAACAGAATAGATTAAGGTACAAACTTTTAACCAAAACCAAATGTTTTATGCAATTTTAATCTCAAATGTTTTTATTGCAAAAAAAGGGTACAGAAAGATTTCTAACTGTTATTAAACGCATTTTTTACTATAGTTATTTTATGAGGCAAGTAGGTAGTTAGAAATTAAAAGTTAGCAACTAAGGCTATTAGTTATTTAATGAAAGAGATATATTTGAGTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU754 lncRNA upstream 36239 1842322 ~ 1843168 (+) True G645
TU702 lncRNA upstream 145018 1733247 ~ 1734389 (+) True G593
TU674 lncRNA upstream 172422 1706770 ~ 1706985 (+) True G576
TU524 lncRNA upstream 389060 1487224 ~ 1490347 (+) True G428
TU547 lncRNA upstream 410605 1458212 ~ 1458485 (+) True G451
TU677 lncRNA downstream 24490 1904470 ~ 1908159 (+) True G579
TU809 lncRNA downstream 38752 1918732 ~ 1918942 (+) True G699
TU810 lncRNA downstream 39276 1919256 ~ 1919564 (+) True G700
TU822 lncRNA downstream 143781 2023761 ~ 2023971 (+) True G710
TU829 lncRNA downstream 158053 2038033 ~ 2038258 (+) True G717
CI01000000_01848610_01851296.mRNA mRNA upstream 27509 1847543 ~ 1851898 (+) True CI01000000_01848610_01851296
CI01000000_01680507_01690297.mRNA mRNA upstream 188213 1680507 ~ 1691194 (+) True CI01000000_01680507_01690297
CI01000000_01511690_01517631.mRNA mRNA upstream 361688 1511690 ~ 1517719 (+) True CI01000000_01511690_01517631
CI01000000_01459294_01485147.mRNA mRNA upstream 394096 1459294 ~ 1485311 (+) False CI01000000_01459294_01485147
CI01000000_01405606_01410241.mRNA mRNA upstream 468904 1405606 ~ 1410503 (+) True CI01000000_01405606_01410241
CI01000000_01898604_01899281.mRNA mRNA downstream 18062 1898042 ~ 1899281 (+) True CI01000000_01898604_01899281
CI01000000_01899373_01901550.mRNA mRNA downstream 19393 1899373 ~ 1901682 (+) True CI01000000_01899373_01901550
CI01000000_01916310_01925119.mRNA mRNA downstream 36072 1916052 ~ 1925390 (+) True CI01000000_01916310_01925119
CI01000000_01978179_01992602.mRNA mRNA downstream 98199 1978179 ~ 1992961 (+) True CI01000000_01978179_01992602
CI01000000_01996254_01997531.mRNA mRNA downstream 116094 1996074 ~ 1997617 (+) True CI01000000_01996254_01997531
TU531 other upstream 446553 1425121 ~ 1432854 (+) True G435
TU431 other upstream 1202470 671842 ~ 676937 (+) True G350
TU325 other upstream 1372335 503209 ~ 507072 (+) True G252
TU3086 other downstream 2573798 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 2846006 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8324851 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 8547243 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 9098509 10978489 ~ 10980872 (+) True G7018

Expression Profile