RNA id: CI01000000_01996254_01997531.mRNA



Basic Information


Item Value
RNA id CI01000000_01996254_01997531.mRNA
length 1544
RNA type mRNA
GC content 0.51
exon number 1
gene id CI01000000_01996254_01997531
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1996074 ~ 1997617 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAAGTCGCTCCGCTTTCGCGCTGCCTAGTCAAAGGCGGGAAAAGAACGCAGGGACCGATTCATTCCTTTAGCGCGCGGAGTTTATTCGCGTATAGACGCAGTTTTGAGAGAGCATATCTTTCTCTCTCCACATACTGCCAAACTCTGTCTTCATTTACCAATCTATCACAGTGGAAATGGATAAATTACCTGCTATGAATATCAGCGCCGGCAACAGTTCCGTGGATAGACGCTCATTTCTGGAGAGAAGTGGCTATCAGCACCTGGATCACGGAGATCTGAAGGTTTTGATTCCAGTGGTGCTAGGAATCATCTGCGTCCTGGGTTTCACCGGGAATGTAACTGCTATGGGAGTCCTGATTTCCAACGCACGTAAAGGTAAGCTGTCCTTGATCAACGCGCTCATCCTCAACCTCATGCTGGCTGATGGTCTGGTCTTGGCATTTGCTGTTCCCTTCAAAGCCACTGCTTATTCCCGTGCAAGCTGGACTCTGGGATTGTTTGTCTGTAAGACCTGTGACTGGTTCTTGCACTCCTGCATGGCTGCAAAGAGCTTCACTGTGGCCATCATGGCCAAAGCTTGCTACAGGTACGTCAGTAACCCCACCAAGCAGGTGACCATCCGTTTGAAGACTATCCTGGTAGTCCTCTTCTTCACTTGGCTCTTGGCGTGCGTGGTCCCAATTCCCCAGTGGCTTTTTTCCACCCTGCAAAAGGAAGGAAACGGAATGATTTGTGTTCAAGCAGTGCCTGTTGATGCCCATGATTTTATGTCTGTGTACGCCAAGGTGTATCCTCTTCTGGCCTACTGCACACCTTTGAGTTTTGCGCTGCTTTATTTCTGGAAGGCGTATGGACGATGTCAGCGCAGGTCCAGCAAAACCCAGAATCTGCGGACACAGATCCGATCCCGCAAACTCACCCTGATGCTATTCAGCCTGACAGTGGCCATGGCCACCATGTGGCTTCCGCAATGGGTTGCCTGGGTTTGGATGCGGCACGCACTGGAGGCTGAAGGTGCCTTCCCTCCGGTCCTCTTCACTCTCTCCGCCCAGCTTCTCATGTTCTCCATCTCTCTAGTCAACCCTCTCATCGTTCTCGCCCTCTCAGAGGAATTCAGAGAGGGCTACATTGGCTTGTGGCGTAGGCTCACCCTCCGCAAGCAACCTCCAAAACACAAGCCAGGACCACACACCCCAACCGCCCCAAAGTCGCCAACCCCAAGACCGGAGACATCAGCCCACCTCCCTCCACACCAGCCAGGGCGAACAGAGGAGAAGCCTGAGAAGCAACTGGACCAGTGTGGAGGACAGCAGGAGAGCCCAACCAACAAGGATGGAATCGTACTGCAAGATGTAGAGCAGTTTTGGCAAGAGAGGGAAACTGGCTCCCAGTCACAGGAAAATGATCCTATACCCTGGGAGCACCAAAATCCCAAGGAAGAAAAACAGTAAGACAGTGTGAATCTACTCCTCTTTTTCATTTCATCAACATAAAAGAAAAAAAAACATATACAACAGATCAGACCTCACCTGAACTA

Function


GO: NA

KEGG:

id description
K08435 GPR151; G protein-coupled receptor 151

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU810 lncRNA upstream 76510 1919256 ~ 1919564 (+) True G700
TU809 lncRNA upstream 77132 1918732 ~ 1918942 (+) True G699
TU677 lncRNA upstream 87915 1904470 ~ 1908159 (+) True G579
TU681 lncRNA upstream 91330 1833989 ~ 1904744 (+) False G579
TU822 lncRNA downstream 26144 2023761 ~ 2023971 (+) True G710
TU829 lncRNA downstream 40416 2038033 ~ 2038258 (+) True G717
TU830 lncRNA downstream 40860 2038477 ~ 2038716 (+) True G718
TU831 lncRNA downstream 41240 2038857 ~ 2039092 (+) True G719
TU833 lncRNA downstream 42747 2040364 ~ 2040732 (+) True G721
CI01000000_01978179_01992602.mRNA mRNA upstream 3113 1978179 ~ 1992961 (+) True CI01000000_01978179_01992602
CI01000000_01916310_01925119.mRNA mRNA upstream 70684 1916052 ~ 1925390 (+) True CI01000000_01916310_01925119
CI01000000_01899373_01901550.mRNA mRNA upstream 94392 1899373 ~ 1901682 (+) True CI01000000_01899373_01901550
CI01000000_01898604_01899281.mRNA mRNA upstream 96793 1898042 ~ 1899281 (+) True CI01000000_01898604_01899281
CI01000000_01879407_01879559.mRNA mRNA upstream 116094 1879407 ~ 1879980 (+) True CI01000000_01879407_01879559
CI01000000_02018856_02033091.mRNA mRNA downstream 20980 2018597 ~ 2034379 (+) True CI01000000_02018856_02033091
CI01000000_02080057_02086228.mRNA mRNA downstream 82214 2079831 ~ 2087510 (+) True CI01000000_02080057_02086228
CI01000000_02092375_02096188.mRNA mRNA downstream 94676 2092293 ~ 2096188 (+) True CI01000000_02092375_02096188
CI01000000_02237986_02243555.mRNA mRNA downstream 240077 2237694 ~ 2243820 (+) True CI01000000_02237986_02243555
CI01000000_02334112_02352906.mRNA mRNA downstream 335938 2333555 ~ 2352912 (+) False CI01000000_02334112_02352906
TU678 other upstream 87266 1815453 ~ 1908808 (+) False G579
TU531 other upstream 563220 1425121 ~ 1432854 (+) True G435
TU431 other upstream 1319137 671842 ~ 676937 (+) True G350
TU325 other upstream 1489002 503209 ~ 507072 (+) True G252
TU3086 other downstream 2456161 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 2728369 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8207214 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 8429606 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 8980872 10978489 ~ 10980872 (+) True G7018

Expression Profile