RNA id: CI01000000_02534790_02541012.mRNA



Basic Information


Item Value
RNA id CI01000000_02534790_02541012.mRNA
length 1576
RNA type mRNA
GC content 0.51
exon number 11
gene id CI01000000_02534790_02541012
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2534790 ~ 2541023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AACCAACGAGGTTGGTGAAGTCAGCGGCTGCCGCATTAGTCAAGCGGGCGGAAAACGGCTGCTTCCAGGATCTGGAAATCTCACTATGCAGATCACTGAAAAAGGGCAGCTTTCTCCGTAATGGCCTAGAATTGGGGCCACTCAAAAACCTCTCATCTAACAAAGAAGAAGTCCAGAGAAAGAGACAAAAGACCCTGCCAAACTTCCAGGACTACAGCGGAGCAGGAGGCGGAGCTGGAGGCATGTTTAGAGGAGGAGGGGGTGGGTCTACAGCAGGGGGCGGCCCCAGTGGAGGAGGAGGACATTTCTTCCAGGGATATCAAAATTATAACAATTATGGGTCTGGATACAACTTCTCAGGCATGGGAGGAGGTGGGACCACCATCAAGCATACATGTCAAGAACCAGTAGAAGACAGCGATGAAGATAGCGACAGTGATACAGATGATGATCCCGCTTCTGGTGGAGTGGTGCGAATCTGTGCACAACCTGAACCTGTTCCCCTGAATCTGGGTGTGGCGAGTGATGACACACAGCCTACAGAATATCTTGAGTTAGACGCCACAGGCTGTGTGTTAGAGTCACATTTGGCTGAGCTAGCTGAAAGACAAGCTCAAGCTCTCTTTCATTACGCATTAAGTGGTGATGCTAGAATGCTTTTGGCTCCACAGCGCCCCCTCATGACCACTCAAGACGAGAATGGAGACACGGGTTTACATCTGGGAGTGATCCACAGTCAGACAGATGCCGTGCGAAATCTAGCTCAAGTCATCTCCGCTCTCCCTGGAGAGGATGTACTCAATATGAGGAATGATCTCTACCAGACTCCTTTGCACCTAGCAGTGTTGACGCAGCAGACAGAGGTAGTCGGGGCCTTATTGGAGGCCAAGGTAGACATCACACTGACAGATCGCCATGGAAACACGGCACTTCACCTGGCGGCTCAACAGAAAGAGGAAAGCATGCTGCGATTGCTCCTAAAGCACAAGTCAATGGCGCAGTTAACTAGCATCCCCAACACAGCAGGTCTCTGTCCGCTTCACCTGGCTGTAAAGGCGAACAGTTTGAGTTGTGTTCGGGCCCTCCTGGATGGCGGGGCAGATGTGGAGGTTCAGGAGCTTACGTGTGGCCGCACAGCACTTCATCTGGCCACAGAGCTGGGCAACCTTTCCCTCGCCGGCTGCCTCCTGCTGGAGGGTAACGCATGTGTAGACAGCGTCACCTACAATGGCTCCACTCCTCTGCACATTGCTGCAGGACGAGACTCAACTAAACTGAGCGCACTTCTAATGGCTGCAGGAGCAGATCCTCATAAGGAGAACTTTGAACCGCTATTCTTTAAAGATGATGAGCTGTGTGGCACATGTGAGGATGAGGAGGAGGATGAAGGCTATATCCCTGGGACAACCCCTCTGAACATGGCAACTTCCCCAGAGGTGTATGATATTCTCAATGGAGAAGAGTATCAGCCCACCACCATCGTCATTGCACCGCAAGGTATGAGCTCCAGGCTTTGTATTCTTGTAATGTTTATGCTGCTTCTGAACAAAAATATTCTTTGCTGAAATACTTTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1657 lncRNA upstream 181421 2351676 ~ 2353369 (+) False CI01000000_02334112_02352906
TU1660 lncRNA upstream 181421 2351717 ~ 2353369 (+) True CI01000000_02334112_02352906
TU1659 lncRNA upstream 182527 2350833 ~ 2352263 (+) True G1473
TU1663 lncRNA upstream 185125 2348793 ~ 2349665 (+) True G1475
TU1654 lncRNA upstream 228125 2306406 ~ 2306665 (+) True G1470
TU1705 lncRNA downstream 50114 2591137 ~ 2595445 (+) True G1509
TU1703 lncRNA downstream 109742 2650765 ~ 2650893 (+) True G1507
TU1802 lncRNA downstream 158651 2699674 ~ 2699896 (+) True G1604
TU1815 lncRNA downstream 221318 2762341 ~ 2762558 (+) True G1617
TU1850 lncRNA downstream 287348 2828371 ~ 2828613 (+) True G1645
CI01000000_02516813_02517287.mRNA mRNA upstream 17003 2516813 ~ 2517787 (+) True CI01000000_02516813_02517287
CI01000000_02496792_02498535.mRNA mRNA upstream 36196 2496744 ~ 2498594 (+) True CI01000000_02496792_02498535
CI01000000_02334112_02352906.mRNA mRNA upstream 181878 2333555 ~ 2352912 (+) False CI01000000_02334112_02352906
CI01000000_02237986_02243555.mRNA mRNA upstream 290970 2237694 ~ 2243820 (+) True CI01000000_02237986_02243555
CI01000000_02092375_02096188.mRNA mRNA upstream 438602 2092293 ~ 2096188 (+) True CI01000000_02092375_02096188
CI01000000_02553141_02553901.mRNA mRNA downstream 11752 2552775 ~ 2554149 (+) True CI01000000_02553141_02553901
CI01000000_02571143_02579505.mRNA mRNA downstream 30120 2571143 ~ 2579505 (+) True CI01000000_02571143_02579505
CI01000000_02586043_02587730.mRNA mRNA downstream 45020 2586043 ~ 2587799 (+) True CI01000000_02586043_02587730
CI01000000_02608926_02617589.mRNA mRNA downstream 67903 2608926 ~ 2617965 (+) True CI01000000_02608926_02617589
CI01000000_02622249_02636433.mRNA mRNA downstream 80914 2621937 ~ 2636482 (+) True CI01000000_02622249_02636433
TU678 other upstream 625982 1815453 ~ 1908808 (+) False G579
TU531 other upstream 1101936 1425121 ~ 1432854 (+) True G435
TU431 other upstream 1857853 671842 ~ 676937 (+) True G350
TU325 other upstream 2027718 503209 ~ 507072 (+) True G252
TU3086 other downstream 1912755 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 2184963 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 7663808 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 7886200 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 8437466 10978489 ~ 10980872 (+) True G7018

Expression Profile