RNA id: TCONS_00012747


Basic Information

Item Value
RNA id TCONS_00012747
length 3754
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_006599
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23634817 ~ 23666579 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCATCGAGTCACGTGAACGTCTGTAACCAATCCATTTTTAGCTTTTCCTTCTCTCCTCTCGGGTCAGTCGAGTCGGCGGAGCGGAGAGGCGATGGCGGTGCGCCTATAAAACTCACCAAGCAAACTTTTCAGAGCTCTGGAAAAGTCTTTATATCCTCGCCAGAGGGAAAACCGTGAACTTTCAGATCGCTGGCGGAAGACTGAAGCTCGCGCGAGCTTGACTGCGGGGGCTGCTGTGTACGCGCGCGACGTGTCCTTGGCGACGGCTGAATTTCGGGAGTCGCAGTTTGTGAACTTCGGAAAGTGAGAGCTAACGCGTTAGCACGACTCTTTAGCCTGACCGCTCATGTAAAGTACCTTACCTAGACAAACGATGGCTGTGCGGATGTTTTTGTACGGGTAGAAATGTAAGTTAATAAGTAACTTAACTTAGGTAGTGTATAATCGTGTATATTTAGCTTGATTCATTCGCCTGGGATGAGCAGGTACTTTGCACCTGTAGCGCCACACGGTGTAAAAACCCAAGCTCTGGGTATGCtgtttacctttttaaaaaacaaatattaaattagttGGTTTTTCATATTAAACCTGAATGGGCATCCTAACAATGTAGGTTTCACTCTAGAATGTAAACAAAAAGTTAGCGTAACGTTAGCGAATACACCGGCTAATGCTGGTGTCACTTCTCACTCCCAGATTGGTTAACTTAGCTGGCTGACGTGGAAACAAAGCAATGCGTCTATTAACCTCTATTAAGCCGGATTTAACCTGACCCACTCTCCATTAATGATATAAAGTGACCTGGCTGGGGTTGTTGGgaactttttgtgtgtgtatgtgcgccaTTGCGGAATACGGCTGTTGGACTAGGCTACTTTGATTTGACATCACGGCACCCTATGGTGCTCCTGCAAGCACCGAGACATGGATGTTCCCCAGGCCGTTTTCCCAAACGGTGAGGGGCGCCTGAGCCTTCAAGACCATGTCTGTACGGAGTCCTCCAACTCCAGGGCTTGGGCTCACTCTGCCCCCGTGTGTCCCCGCTCGCTCTGGACCGCGGTGTTTGACTACGAGGCCAGCGGGGAGGACGAGCTCAGTCTGCGGCGAGGAGACGTGGTGGAGGTCCTGTCGAAGGACGCTGCCATCTCAGGAGACGAAGGCTGGTGGACTGGTAAAATTAACCACCGCGTGGGCATCTTCCCATCTAATTATGTTACGTTCCAACCAGTCATTTACAGAGCGGTTGGGGCTCGAGAAAGCGACCCTTCCGCGCCTGTTCGGATACCTTTTTCTGAACTGGTTCTACAGGAAATTATCGGCGTCGGTGGGTTTGGCAAAGTCTACCGGGGAACCTGGAAGGTGCAGGAGGTCGCAGTGAAGGCAGCTCGACAGGACCCCGATGAGGACATTAAAGCGACTGCGGACAGTGTTAAGCAAGAAGCCAAACTTTTCTCAATGCTTCAACATCCTAACATTATCAAACTGGAGGGGGTGTGTTTGGAGGAGCCCAACCTGTGTCTGGTCATGGAATATGCCCGTGGAGGGACTCTGAACCGTGCTTTGACCGGCAGGAGGATCCCCCCTCACATCCTCGTGAACTGGGCCGTCCAGATCGCCAGAGGCATGCAGTATCTCCACGAGGAAGCGGTGGTTCCCATTATTCACCGGGACCTGAAGTCCAGCAACATTTTATTACttgaaaaaattgaaaatgaTGACATTGGTCGAAAAACCCTGAAGATTACTGACTTTGGCCTTGCTCGTGAGTGGCACAAAACGACCAAAATGAGTGCAGCTGGCACTTACTCCTGGATGGCTCCTGAAGTCATCAAGTCTTCTCTGTTTTCCAAAGGGAGTGATGTCTGGAGTTATGGAGTCCTCCTTTGGGAATTACTGACTGGAGAGATTCCTTACCGTGGCATCGACGGTTTGGCAGTTGCTTATGGCGTGGCCGTCAACAAATTAACCCTTCCAATTCCATCTACATGCCCAGAGCCTTTTGCCAAGCTCATGGAAGAATGTTGGGAGCAGGATCCACATATCCGTCCATCCTTTGCAGCCATCTTGGAGCAGCTGACTGCCATAGAGGAGGCTGTGATGGCCACCATGCCTCAGGATTCCTTCCATTCAATGCAGGAGGACTGGAGAGTAGAGATCCAGGAAATGTTTGATGAGCTGCGCACTAAAGAAAAGGAGCTTCGTTCTCGTGAGGAGGAGCTGACGCGAGCAGCGCTTCAGCAGAAGTCTCATGAAGAGCTGTTGAAGAGGAGGGAGCAGCAGCTGGCGGAGCGGGAGATTAACGTGTTGGAGCGTGAGCTCAACATCCTCATCTTCCAACAAAACAAGGACAAGCCCAATGTTAAGAAACGGAAGGGCAAATTCAAACGCAGCCGCCTCAAGCTCAAAGATGGAAACCGCATCAGCTTACCCTCAGTGACTCTGGATGAGAGCAACAGGACATGGGGACGAAGCACCAATTACAAACCGGAGGAGTTTGAAGATGTCAAGAAAGGGTTTAAGAAGAAGGGTCGCACATGGGGACCAAGCTCTGTGCAAACGAAGGAAAGAGGAAATGGTGCTGAAAGAATTCGTCCTCTTTCAGATGGAAGCAGTCCTTGGTCCACCAGTCTATTGAAGTCTCAGAAATCTGTTCCATTAGCTGCATTGTTTGCAGACCAGGGGACCAATAAAGATGAAGCAGGCTCTGCTGATTCATCCGACAACAAACCAAAGCAACTCAAGTTCCCCAACCAGGTGTATATCGATCTACCTCTGTGGAAAGATGAACCAGGCGAGAACCAGAGTTCAACAGGAGGAGGAGCTGAGAGCCAGGAGGACCCAACCACCTCCACCAGCTCCACCAGCACCACCCCACAGCACACACCCACCAACAGCCTGAAGCGCAGCACCACCCGCCGCCGCACTGACTCTGTTCTCTACGGCTGTGCCTCAATCCTGGCATCTGTCGCATTCGGCTTTGACCTGCAAGAGATCTGTAAGAACCCTGCCAATGAAGAACCTGAGCCTCGtgaggagaagaagaaaaaagaaggcCTGTTTCAGCGCGCCACTCGCTTCCGCCGCAGCACCAGCCCTCCAGGCGGACGTTCGCGAAAAGATGAGATTTCCACAGCACCCGTAAACCTGCTCGCCATGTCATCCATTTCTGAGTGCAACTCCACCAAGTGCCTCCTGCAGTCAGATTTTGAGGGTCCTGGGTTTAACCTGGTTAACGAGACTGGCATTTCGCCTCAGAGTAATGGTACTGGTGAAGGACTGCACTTAACACCTGTACAAGAGCTCTCTTCTGGAGCCAACTCTCGACTGAGGAGGAAAAAGTCCAGTCCGGCTGTGTGCCAGAACGTCAATGGAAGCAGCAACTCTCCAGTCAGTCCAGCTGATTCTTCTACCACTTCTACAAAGAAGAAGGCTGACAAAGAGCCTCCTCAAGACAAGCAGACCTCTGGGGAATCAGTATCTCGACCCAGACCGCTTTCCCTCAGAGGCAAATCTCATTCCTGGAGTCTTCTGAAGAGTCGCAATAAGAGCTATTCTCTGGGACACTACTCTGGGGAGAAGAGTGTCCAAAACCTGGACATGCTGCTCCCTGCTGAGGTCAAAACCGGCTGCTCATTACTGGACATGGACACAGAGGGTCAAAAACGAGACTGCACCGTTCCCCTCTGCCGGATACAGAGCACACCAAGTCGGGGGTCTGTATTCGAACTGGAGAAACAGTTTTTATCCTGA

Function

GO:

id name namespace
GO:0007257 activation of JUN kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004706 JUN kinase kinase kinase activity molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-24 Predicted to enable JUN kinase kinase kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human MAP3K21 (mitogen-activated protein kinase kinase kinase 21).

Ensembl:

ensembl_id ENSDART00000179777

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013784 lncRNA downstream 223417 23408029 ~ 23411631 (-) False XLOC_006597
TCONS_00013785 lncRNA downstream 224489 23408669 ~ 23410559 (-) True XLOC_006597
TCONS_00013783 lncRNA downstream 417230 23212759 ~ 23217818 (-) False XLOC_006595
TCONS_00013782 lncRNA downstream 417230 23212759 ~ 23217818 (-) True XLOC_006595
TCONS_00013781 lncRNA downstream 417414 23212759 ~ 23217634 (-) False XLOC_006595
TCONS_00013481 lncRNA upstream 680410 24346989 ~ 24351543 (-) True XLOC_006611
TCONS_00013786 lncRNA upstream 906507 24573086 ~ 24574746 (-) True XLOC_006616
TCONS_00013787 lncRNA upstream 910686 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00012770 lncRNA upstream 918645 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013788 lncRNA upstream 923841 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012743 mRNA downstream 22679 23488282 ~ 23612369 (-) False XLOC_006598
TCONS_00012742 mRNA downstream 22724 23488282 ~ 23612324 (-) False XLOC_006598
TCONS_00012745 mRNA downstream 23088 23606693 ~ 23611960 (-) True XLOC_006598
TCONS_00012740 mRNA downstream 364472 23233956 ~ 23270576 (-) False XLOC_006596
TCONS_00012741 mRNA downstream 370324 23234904 ~ 23264724 (-) True XLOC_006596
TCONS_00012749 mRNA upstream 61597 23728176 ~ 23756700 (-) True XLOC_006600
TCONS_00012750 mRNA upstream 252901 23919480 ~ 23956178 (-) False XLOC_006601
TCONS_00012751 mRNA upstream 258860 23925439 ~ 23956361 (-) True XLOC_006601
TCONS_00012753 mRNA upstream 329491 23996070 ~ 24018916 (-) True XLOC_006603
TCONS_00012754 mRNA upstream 401998 24068577 ~ 24218795 (-) True XLOC_006604
TCONS_00012744 other downstream 121245 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 776593 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012723 other downstream 787564 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 790366 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 791243 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012752 other upstream 294713 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 460484 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 617091 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 1392154 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 1524997 25191576 ~ 25198063 (-) True XLOC_006628

Expression Profile

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