RNA id: TCONS_00012750


Basic Information

Item Value
RNA id TCONS_00012750
length 1730
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_006601
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23919480 ~ 23956361 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGATTTGGAGCTCGACTGCGTTTATCGCGACTTCACAAAGTATGGAAAAGCTCTTTTGAGAAGCGGATCTCAGAGCCGGAGAAGTGAAATGCGTCTGCTGTTATGTCGATCGAGTGGGCTTTGTTGGACAAGTTCTTGGGGCGTCGTATGATTTTTGTTTAGAGGCCCATTGGAGATCGACATGGGCCAGACATCTGTCTCCAGCTTGTCACAGAGAGCGAGCGTGGAGGGGCTGGAAAAATCTTCTCTTGCCAACTGTGATGTGGTGGGAAGCTCTCAGTCTCCTCAGCTGAAAGGAAAGGGTAAGCTCTCTTCACTGGGCAAGATCTTTAAACCTTGGAAATGGAGAAAGAAGAGGACCAGTGATAAGTTCCAGGACCTCTCCAAAGTTCTGGAGAGGAAAATATCCACCAGGCAAACAAGAGAAGAGCTTATAAAGAAGGGTGTGCTTATTCCAGACCAAGATGACCCTTTGAACACAGAGACCTTGAATGGCCATGCAGTGCCCAGTGGAGGTACTGAAAAGGTCAAAGTGGACATTGAAACACCAGAACCAGTCCCAGAAGAGAAATCAGACTTGGCGGCAGTGGCAGAGGAGCCAGAAGCTAAAACTTCGAATGCTAAAAAAACTACAGGCACATCCAAAGGATCCTCTCAGGCTTCAGGTCAATCATCTTCACAGACCTCCTCAAAAACCTCCAAAAACAGCAACTCAGAACATACAGGACAAGCCAAGACTGGTAAGAAGACTGAACCCTCCAGGTCGCAGCGGCCCCTTTCTAAAACACAAGAGACTGTGGAAAGCTCCTCTAAAAAGgaccaaaagaaaaaagaattaaCCACCAGTGTTAATGAAAAGGCAGAGGAGAAATCTCAAAACGGGAAGGGTGACAGTCATCTTTCGAAGTGTGCAGAGACCGACAAAAGACAGTCTCATGTTAACCAGGCCACAGAGGAAACCTCCTTCATTGGGTCCTCAAATGAACTTTCGTCAGATGCGTCAGCTGAACCTGTGAACGTAGAGACTGAGACACAGAAAGAGAAAGCGGATCAGACACAGAGggATGCTGGGAAGGAAGAGGGAGAGAGACAGCAAACTGTCAATGTGGAAAGTGCAGAGGTCACCATCATTCCTGACTCCATTCGGGAAAACCAGGCAAATGACTCTGATTCAGATGGACCTATTCTCtataaagatgatgatgaagaggaggatgaagatgatgagtATACCTCTAGCTCCCTTGCCAGTAAAATTCGCCGCAGGGACACTCTTGCTATTAAACTTGGTAACAGGCCCAGCAAGAGGGAGCTTGAAGAGAAGAACATTCTCCCACGAACCTCGGAGATGGAGCGACAGGAGCTAAGACAGCAAATCGGCTGCAAACTAGTCAGACGGTTGAGTCAAAGACCCACCACAGAAGAGCTTGAACAGCGAAACATTCTAAAACAGAAAAATGAGGAAGAAGAACATGAGGCCAAGCAGGAGATTAAAAGACGACTGTCCCGAAAGctcAGTGTTCGGCCCACAGTCGCAGAATTGGTGGCACGCAGAATTTTGCGCTTCAATGAATATGTGGAGGTCACAGAAGCAAAAGACTATGATCGACGTGCTGACAAGCCCTGGACTAGGTTAACCCCTGCAGACAAAGCTGCTATACGTAAGGAACTTAATGAGTTTAAAAGCAAAGAAATGGAAGTCCATGAAGAAAGCAAACAATTTACAAG

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0004864 protein phosphatase inhibitor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-11 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Human ortholog(s) of this gene implicated in Parkinson's disease and multiple sclerosis. Orthologous to human PHACTR2 (phosphatase and actin regulator 2).

Ensembl:

ensembl_id ENSDART00000133646

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013784 lncRNA downstream 507849 23408029 ~ 23411631 (-) False XLOC_006597
TCONS_00013785 lncRNA downstream 508921 23408669 ~ 23410559 (-) True XLOC_006597
TCONS_00013783 lncRNA downstream 701662 23212759 ~ 23217818 (-) False XLOC_006595
TCONS_00013782 lncRNA downstream 701662 23212759 ~ 23217818 (-) True XLOC_006595
TCONS_00013781 lncRNA downstream 701846 23212759 ~ 23217634 (-) False XLOC_006595
TCONS_00013481 lncRNA upstream 390811 24346989 ~ 24351543 (-) True XLOC_006611
TCONS_00013786 lncRNA upstream 616908 24573086 ~ 24574746 (-) True XLOC_006616
TCONS_00013787 lncRNA upstream 621087 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00012770 lncRNA upstream 629046 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013788 lncRNA upstream 634242 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012749 mRNA downstream 162780 23728176 ~ 23756700 (-) True XLOC_006600
TCONS_00012748 mRNA downstream 252901 23635048 ~ 23666579 (-) False XLOC_006599
TCONS_00012747 mRNA downstream 252901 23635048 ~ 23666579 (-) True XLOC_006599
TCONS_00012746 mRNA downstream 253900 23634817 ~ 23665580 (-) False XLOC_006599
TCONS_00012743 mRNA downstream 307111 23488282 ~ 23612369 (-) False XLOC_006598
TCONS_00012753 mRNA upstream 39892 23996070 ~ 24018916 (-) True XLOC_006603
TCONS_00012754 mRNA upstream 112399 24068577 ~ 24218795 (-) True XLOC_006604
TCONS_00012756 mRNA upstream 275149 24231327 ~ 24263682 (-) False XLOC_006606
TCONS_00012757 mRNA upstream 278154 24234332 ~ 24260609 (-) False XLOC_006606
TCONS_00012758 mRNA upstream 278496 24234674 ~ 24257631 (-) True XLOC_006606
TCONS_00012744 other downstream 405677 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 1061025 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012723 other downstream 1071996 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012722 other downstream 1074798 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012721 other downstream 1075675 22839821 ~ 22843805 (-) True XLOC_006584
TCONS_00012752 other upstream 5114 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012755 other upstream 170885 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012759 other upstream 327492 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012791 other upstream 1102555 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 1235398 25191576 ~ 25198063 (-) True XLOC_006628

Expression Profile

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