RNA id: TCONS_00013786


Basic Information

Item Value
RNA id TCONS_00013786
length 802
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_006616
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24573086 ~ 24574746 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCAGTCGATCCTAATAAATTAGGCTTGGCGAATGGACATGGATACCACAGATGGCAAACAGGATGAAAACCAGACGAGGAACCAGGAGACACCACACTGGGAGAGACATGGAAGACACAGGAAACGCAAATTGGAATGGACCACATGGAGAAAAAGGGAATCaaacctcagcaatgactggaaaTTGATGGTcaggaattttttaaaaatccagtcGATGGGTGCATGGATGGACGTCCTTGCAAGATACAAGAGTGGTAATCAGTTTGGATGAGGAATTAGGCCTTGTCTGTGtgaggtttttctttttcaggtaatggagaTAGAGCAGGCAGAAGAGGAGCAGGTATGGCTTTGTTGGGGCTGTTTTTGTCTTTTACAGATTGAAGTGgagcagaagaaggagactcaAAAGGCAGGAGATATGCTTCAAGACCTGGAGCTCAGGAAACAGGTAGAACTGCTTAAACAGATTGAACAATGGAGTTAGTTTCCAAAGCAATGTATTAAGATTAATTGAAGacttgatatctttctctttgcaGTTGGAGCATGTGGAGCAACAGGGAAACACACCTGCATGTATGGATGTCCTTCCaggaggaagggggtggtggtgggcatagatagatgtcttgtctgtggctgttatttacaCTGTAGGTAATGGAACCACAACAGACAAAAAAAGAGAGCCTCACAAGCGGAATGGTGAATATTTATCTGAAGAACGCTGGAGAACATTTGGCTTATTGCTGGAGATcaagtcttgtttttgtcttttgcagattagaCTGGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013481 lncRNA downstream 221543 24346989 ~ 24351543 (-) True XLOC_006611
TCONS_00013784 lncRNA downstream 1161455 23408029 ~ 23411631 (-) False XLOC_006597
TCONS_00013785 lncRNA downstream 1162527 23408669 ~ 23410559 (-) True XLOC_006597
TCONS_00013783 lncRNA downstream 1355268 23212759 ~ 23217818 (-) False XLOC_006595
TCONS_00013782 lncRNA downstream 1355268 23212759 ~ 23217818 (-) True XLOC_006595
TCONS_00013787 lncRNA upstream 2519 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00012770 lncRNA upstream 10478 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013788 lncRNA upstream 15674 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012771 lncRNA upstream 27664 24602410 ~ 24606627 (-) False XLOC_006620
TCONS_00013789 lncRNA upstream 29634 24604380 ~ 24606627 (-) True XLOC_006620
TCONS_00012768 mRNA downstream 124808 24429918 ~ 24448278 (-) False XLOC_006615
TCONS_00012769 mRNA downstream 125754 24431989 ~ 24447332 (-) True XLOC_006615
TCONS_00012766 mRNA downstream 143991 24421515 ~ 24429095 (-) False XLOC_006614
TCONS_00012767 mRNA downstream 144020 24425081 ~ 24429066 (-) True XLOC_006614
TCONS_00012764 mRNA downstream 176887 24381344 ~ 24396199 (-) False XLOC_006613
TCONS_00012772 mRNA upstream 90588 24665334 ~ 24669258 (-) True XLOC_006621
TCONS_00012773 mRNA upstream 126660 24701406 ~ 24717618 (-) False XLOC_006622
TCONS_00012774 mRNA upstream 127012 24701758 ~ 24717388 (-) False XLOC_006622
TCONS_00012775 mRNA upstream 132072 24706818 ~ 24717365 (-) True XLOC_006622
TCONS_00012776 mRNA upstream 167978 24742724 ~ 24745288 (-) True XLOC_006623
TCONS_00012759 other downstream 286696 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 445907 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 611680 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012744 other downstream 1059283 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 1714631 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012791 other upstream 483987 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 616830 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012805 other upstream 955788 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 970930 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1992320 26567066 ~ 26567184 (-) True XLOC_006646

Expression Profile

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