RNA id: CI01000000_10468528_10473166.mRNA



Basic Information


Item Value
RNA id CI01000000_10468528_10473166.mRNA
length 1848
RNA type mRNA
GC content 0.36
exon number 6
gene id CI01000000_10468528_10473166
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10467552 ~ 10473166 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGTGCAGTGTAAGATCATCAACCTCGAGTATGTGAAGTGCATCTGGAACCCAAACACATCAACAATGAACTACACCTTCAGCAGTAAATTTGCAAACGACGACTCCCACGACTGTCAAGAATACATCTTGGAGCACAATTACGCTGTAGGCTGCAAAATTCCTCTCAAAAACCATGATCAGAAGTTTTCAAAATTTCAAATATCTGTGTCCACTGAAGGAAACCACACTTTTGAAAAATCTTTTCATTCCCTCAAGAGCCTTGTGCAGCTAAAAGCACCCTATAACCTCTCAGTGAAGTGGAATGAGCACAACAGCACACTTTTACTACAGTGGAACAGCAGTACCACCCTCAAAGATAACTGTGTAGTCTATAATGTGCGCAACCAGAAAGACGAAACCCAGTTGTCAGCAAATGTGACAAAAAAGTCATACAGTCTGACGCAGGTCTCACAGAACAAGCACTATGTTTTCCAAGTCCGGAGCACTGTCTCTGGTCTCTGTGGTTCTTCAGATTTATGGAGTGACTGGAGCCCTCCAGTGGAGTGGGGCAGTGCAGAGAACATCAGCAGACAAGGCTGGTCGCAGTGGTTGTATGGTTTTCTGTCAGTACTTATGCTGTTCTTGCTGGGTTTGTTGTTGTGCTATTGTGAGAGACTTGGATGTACTGTAACCCTCTCACTTTATTCTCAGAGCTGGGTTCACATCTCCAGAGAGCTGAAGGATGCCTTTGAGCCAGACTACACAGAGCCGTCCTGCGATGTGTGTGAGGTTACGCCCTCTTGTGAAGCCGATCCCACACCTGTGGCCAGTCCTGCTCCTCAAACTGACAAGTGTGATGAACCAAGCGCTGCAGAAGAGCAGAGCTCATAAGACGAAGAGGTGTTAACCTTTCACCTGAACTGTCATCTCATTCTTACTGTACATGTTCACAAGCGACATTTCAGTGTCTGTTCTCATTTGCACATTTATCTTTTACAATTGTATGTAGAGTTTAAGTATAAGACAGATGGAAATTTAAATGACTAACATTATCAATACTACAGTGAATCTAATAGTTTGGAGTTGTTACACTGACGAAGGTGGAATTTATTTGATCAAAAATACAGTAAAAACAACAACATTGTGAAATATTATTACAATTTAAAATAATTGTTCTCTATTTGAATATATTTTAAAATCTGATCTAATTCTTGTGATGGCAAAGCTGAATTGTGTCATATGATATTTCAGAAATCATTCTGAAATCGTGCTGATTTAGTGTTGAAAACAATTGTGCTGCTTAATATTTTTAATATTTTATATATATATTAAATATGTTATATTATTAAAAATATTAAATATGTATTTTATAATATTTTTGTGGAAAATGTGATAAATTTTTTCTCATGATTCTTTGTTGAATAGAAAGTTTAAAAGAACATTTATTTGAAATAGAACTTTTGTAACATTATAAATGCCTTTTTTTAAATTGTTTTGATCAATTTAATGCACCTATGTTGAACAGAAGGATTAATTTCTTACTGTACCCAAATTTAAAAACTTAAAAATACATGAATGTCTTTGCATTACAGCATTTAAAGGTATATCAAACCAATGGCATTTAATTTAAAGAAATATAGCACACTTTCAGAAGTGTTTAACTTTTTTGGGGGGGTATTGTTAGGTTTTTAATTCTAAAACAATATACAGTATGTATTGTGTTAAGGCTACAGGTATTTCTACACTTTTTGATGGAGAACTTGAAGTAAACAGACTTCATAAATCCACTAAGAATCACCGTGTGCACATAATATTTAATGAAACTGCCTTTTAAGTTTGGTAACATGTTGAACAGATATGTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8849 lncRNA downstream 33266 10434021 ~ 10434286 (-) True G8028
TU8767 lncRNA downstream 96405 10369020 ~ 10371147 (-) True G7946
TU8837 lncRNA downstream 122056 10344942 ~ 10345496 (-) True G8016
TU8744 lncRNA downstream 245278 10221012 ~ 10222274 (-) True G7924
TU8697 lncRNA downstream 318472 10147499 ~ 10149080 (-) True G7884
TU8789 lncRNA upstream 112431 10585597 ~ 10589211 (-) True G7968
TU8812 lncRNA upstream 231733 10704899 ~ 10719278 (-) True G7991
TU8806 lncRNA upstream 299261 10772427 ~ 10774179 (-) True G7985
TU8817 lncRNA upstream 322194 10795360 ~ 10796229 (-) True G7996
TU8903 lncRNA upstream 442844 10916010 ~ 10916315 (-) True G8080
CI01000000_10465427_10467327.mRNA mRNA downstream 225 10465203 ~ 10467327 (-) True CI01000000_10465427_10467327
CI01000000_10448446_10452941.mRNA mRNA downstream 14611 10448272 ~ 10452941 (-) True CI01000000_10448446_10452941
CI01000000_10431043_10433001.mRNA mRNA downstream 34353 10431034 ~ 10433199 (-) True CI01000000_10431043_10433001
CI01000000_10417521_10426279.mRNA mRNA downstream 41273 10417402 ~ 10426279 (-) True CI01000000_10417521_10426279
CI01000000_10407402_10409508.mRNA mRNA downstream 57602 10407395 ~ 10409950 (-) False CI01000000_10407402_10409508
CI01000000_10474520_10476010.mRNA mRNA upstream 1245 10474411 ~ 10476010 (-) True CI01000000_10474520_10476010
CI01000000_10481263_10483211.mRNA mRNA upstream 7923 10481089 ~ 10483594 (-) True CI01000000_10481263_10483211
CI01000000_10504203_10520863.mRNA mRNA upstream 31037 10504203 ~ 10520863 (-) True CI01000000_10504203_10520863
CI01000000_10533216_10540624.mRNA mRNA upstream 59968 10533134 ~ 10540968 (-) True CI01000000_10533216_10540624
CI01000000_10544400_10562125.mRNA mRNA upstream 71156 10544322 ~ 10563078 (-) True CI01000000_10544400_10562125
TU8769 other downstream 53039 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 4064027 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 4466783 6000407 ~ 6000769 (-) True G3716
TU4058 other downstream 4926671 5540463 ~ 5540881 (-) True G3650
TU3917 other downstream 5001036 5465454 ~ 5465799 (-) True G3519
TU8770 other upstream 351245 10827450 ~ 10827595 (-) True G7949
TU8948 other upstream 567103 11040269 ~ 11040909 (-) True G8125
TU9592 other upstream 2812158 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 2831110 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 3253634 13726800 ~ 13727090 (-) True G9036

Expression Profile