RNA id: CI01000000_10722125_10723905.mRNA


Basic Information

Item Value
RNA id CI01000000_10722125_10723905.mRNA
length 489
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000000_10722125_10723905
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10722056 ~ 10724052 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGAGTGACTGAGAACAAAGTTCTCTTTGAAAAAGATGCTCTTTGAAAATAATAATGGAAATGAAAATTTGAAAGGGCTGAAGCTTTGCGGAGCATAAGTTCTCTCGTTGCATGTGTAATCGCACGATAATTGGCCACATTTCCAAATGTGGATCCGATGCCCCAGGGAAAACAATTGCACTAGTCTCACTGATTTTCATAGCAGCTGTTTCCTAGTCCTGGTTCACATAAAGAGAGGCTCAGATCTGCAGGTGTGCCAGCCGAAAGGCCTGACTTGCTGTTCTCGCAAAATGGAGGAGCGCTACCTGCTCATTGCCAAGCAGAATATGGAGTCAAGTCTTCAGGCCACCAGCGCTCAACTCAAAGTTCTCATCATTCAGAATGCTGCCCTCTTTCAAGGTACGCTAGTGAGACCTTGAGTTAAGTGTAAGGGAGGTTGGTCTTTTATGTCAGATTGGCAATGATTAAGAAATTAAGAAATGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8812 lncRNA downstream 2778 10704899 ~ 10719278 (-) True G7991
TU8789 lncRNA downstream 132845 10585597 ~ 10589211 (-) True G7968
TU8849 lncRNA downstream 287770 10434021 ~ 10434286 (-) True G8028
TU8767 lncRNA downstream 350909 10369020 ~ 10371147 (-) True G7946
TU8837 lncRNA downstream 376560 10344942 ~ 10345496 (-) True G8016
TU8806 lncRNA upstream 48375 10772427 ~ 10774179 (-) True G7985
TU8817 lncRNA upstream 71308 10795360 ~ 10796229 (-) True G7996
TU8903 lncRNA upstream 191958 10916010 ~ 10916315 (-) True G8080
TU8904 lncRNA upstream 192933 10916985 ~ 10917184 (-) True G8081
TU8905 lncRNA upstream 193642 10917694 ~ 10917894 (-) True G8082
CI01000000_10612377_10662964.mRNA mRNA downstream 59092 10612377 ~ 10662964 (-) True CI01000000_10612377_10662964
CI01000000_10590812_10591914.mRNA mRNA downstream 129771 10590047 ~ 10592285 (-) True CI01000000_10590812_10591914
CI01000000_10544400_10562125.mRNA mRNA downstream 158978 10544322 ~ 10563078 (-) True CI01000000_10544400_10562125
CI01000000_10533216_10540624.mRNA mRNA downstream 181088 10533134 ~ 10540968 (-) True CI01000000_10533216_10540624
CI01000000_10504203_10520863.mRNA mRNA downstream 201193 10504203 ~ 10520863 (-) True CI01000000_10504203_10520863
CI01000000_10734747_10737823.mRNA mRNA upstream 10498 10734550 ~ 10737823 (-) True CI01000000_10734747_10737823
CI01000000_10745761_10748814.mRNA mRNA upstream 21483 10745535 ~ 10751206 (-) True CI01000000_10745761_10748814
CI01000000_10785646_10788722.mRNA mRNA upstream 61458 10785510 ~ 10788722 (-) True CI01000000_10785646_10788722
CI01000000_10824957_10825464.mRNA mRNA upstream 100272 10824324 ~ 10825464 (-) False CI01000000_10824957_10825464
CI01000000_10865036_10883334.mRNA mRNA upstream 140968 10865020 ~ 10883334 (-) True CI01000000_10865036_10883334
TU8769 other downstream 307543 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 4318531 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 4721287 6000407 ~ 6000769 (-) True G3716
TU4058 other downstream 5181175 5540463 ~ 5540881 (-) True G3650
TU3917 other downstream 5255540 5465454 ~ 5465799 (-) True G3519
TU8770 other upstream 100359 10827450 ~ 10827595 (-) True G7949
TU8948 other upstream 316217 11040269 ~ 11040909 (-) True G8125
TU9592 other upstream 2561272 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 2580224 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 3002748 13726800 ~ 13727090 (-) True G9036

Expression Profile