RNA id: CI01000000_11587766_11588330.mRNA



Basic Information


Item Value
RNA id CI01000000_11587766_11588330.mRNA
length 754
RNA type mRNA
GC content 0.32
exon number 3
gene id CI01000000_11587766_11588330
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11587316 ~ 11588330 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAAAATAAACAACTTTTTAAAAAGGATGCATCCTACCGAAGATCAGATTGCATCCTACATTGACAATTTCCGGGAAAAGTTATGGCCAGATGGAAACGTGCCCTACCAGCCGCCACGTGACAATTCAAACTCTCTAATCCTCAAGAAGACTGATGTGGAAACTTTGTTTAAGATATTCCAGGACACGGAGGAGAACAAGAAACTGGTTTATAGGCTGCTTTCGTATGTTCTAAGGGAGTTCCTGCCTGGAGAGCCTGCCTTTAGTTCAATAGCTAATCTAACTGTGAAGAATTGTGTTTCATAATAGAAACAGGATCTTTTATTATTTTAATAATGTGTCTAATGTTTTTAAATGTGCATTATTTAATATTTTATATGAATATTCTTCAAAGATGCATTCTGATATACCTCAGAGAGGTCATGAGCAGCATGAACACTATTGAATTTTTTTTTTTATTCAACAAAAATGTTATCCTCTGTTTGCTTTAGCTACTGTGATTATGGTTCATCTAAAAAAAATCACAATATATTGGGTGTAAATTTTAATTTTTTTTTTTTTTAAATGATCACTGTATAAGTTAACTTTTTGTTTTGTTCCTTAAAATTGTACACTGTGAATGACTGTTTTTCTGTTTTATAACCGCACAGCTTACTCAGAACAAAATAGATAGTCATTATGTTACTGATTATGTTTTTACAACAAGACTTAATACAGGGTCTGTGAGGAATGTATTTGAATAATATTGGCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9007 lncRNA downstream 394141 11192967 ~ 11193175 (-) True G8180
TU8999 lncRNA downstream 411292 11175754 ~ 11176024 (-) True G8172
TU8988 lncRNA downstream 442343 11144751 ~ 11144973 (-) True G8161
TU8982 lncRNA downstream 452619 11134400 ~ 11134697 (-) True G8155
TU8969 lncRNA downstream 487763 11099192 ~ 11099553 (-) True G8142
TU9088 lncRNA upstream 26396 11614726 ~ 11614965 (-) True G8251
TU9083 lncRNA upstream 30524 11618854 ~ 11619745 (-) True G8246
TU9090 lncRNA upstream 31771 11620101 ~ 11620367 (-) True G8253
TU9091 lncRNA upstream 32229 11620559 ~ 11620817 (-) True G8254
TU9092 lncRNA upstream 32852 11621182 ~ 11621419 (-) True G8255
CI01000000_11584045_11586744.mRNA mRNA downstream 334 11583971 ~ 11586982 (-) True CI01000000_11584045_11586744
CI01000000_11541564_11559682.mRNA mRNA downstream 27634 11541451 ~ 11559682 (-) True CI01000000_11541564_11559682
CI01000000_11536835_11537863.mRNA mRNA downstream 48608 11536313 ~ 11538708 (-) True CI01000000_11536835_11537863
CI01000000_11520786_11533683.mRNA mRNA downstream 53404 11520187 ~ 11533912 (-) True CI01000000_11520786_11533683
CI01000000_11515517_11516404.mRNA mRNA downstream 70880 11515352 ~ 11516436 (-) True CI01000000_11515517_11516404
CI01000000_11600258_11602519.mRNA mRNA upstream 11652 11599982 ~ 11602580 (-) True CI01000000_11600258_11602519
CI01000000_11603826_11605350.mRNA mRNA upstream 15470 11603800 ~ 11605350 (-) True CI01000000_11603826_11605350
CI01000000_11644676_11648034.mRNA mRNA upstream 55716 11644046 ~ 11648034 (-) True CI01000000_11644676_11648034
CI01000000_11650257_11652811.mRNA mRNA upstream 61574 11649904 ~ 11654726 (-) True CI01000000_11650257_11652811
CI01000000_11661528_11696310.mRNA mRNA upstream 72683 11661013 ~ 11696310 (-) True CI01000000_11661528_11696310
TU8948 other downstream 546407 11040269 ~ 11040909 (-) True G8125
TU8770 other downstream 759721 10827450 ~ 10827595 (-) True G7949
TU8769 other downstream 1172803 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 5183791 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 5586547 6000407 ~ 6000769 (-) True G3716
TU9592 other upstream 1696994 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 1715946 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 2138470 13726800 ~ 13727090 (-) True G9036
TU10603 other upstream 2752672 14341002 ~ 14346534 (-) True G9602
TU10602 other upstream 2797027 14483120 ~ 14498594 (-) True G9601

Expression Profile