RNA id: CI01000000_11721762_11759751.mRNA


Basic Information

Item Value
RNA id CI01000000_11721762_11759751.mRNA
length 2739
RNA type mRNA
GC content 0.52
exon number 23
gene id CI01000000_11721762_11759751
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11721567 ~ 11759751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAACCCTCCCCCCATCATTGTGAACGCAGACTCACTGGATGCAGGCCCTTATGTGAATGGGAGTGATGGCATGTATAAATATGAAGAAATCATTCTGGAGAGGGGCAACTCTGGCCTTGGGTTCAGCATTGCTGGAGGTGTGGATAATCCACACATTCCTGATGATCCAGGAATCTTCATCACAAAGATCATCCCAGGAGGTGCCGCTGCCATGGATGGGAGACTAGGGGTAAATGACTGTGTTCTGCGGGTGAATGATGTGGACGTGTCAGAGGTTGTGCACAGCAAGGCAGTAGAGGCTTTGAAGGAGGCCGGCCCAGTGGTCAGGTTGCTGGTACGCAGAAGACAGGCTCCTCCGGAGACCATTTTGGAGGTCAACCTACTCAAAGGGCCGAAAGGTCTTGGCTTCAGTATTGCTGGAGGTATAGGCAACCAGCACATCCCGGGTGACAACAGTATCTACATCACAAAGATCATCGAGGGTGGGGCGGCACAGAAAGATGGACGACTGCAGACAGGCGATCGCCTACTAGCTGTGAATAATATTATACTTCAGGATGTGCGTCATGAGGAGGCTGTGGCCGCCCTGAAGAATACTTCAGACATGGTCTATCTGAAAGTGGCCAAGCCGGGACCAGTACATCTCAACGACATGTACGCCCCACCAGACTACTCCAGCACCTTTCCCACCATGGTGGACAACCACGTTGGACACAACTCCAGCATGGCCTACATGGGCGGCATGGAGCCTAAACCAGTGTACCAGCCACCCCAGGTTACCCCCTCGAGGTACTCCCCAGTCCCACGGCACATGCTGGGGGAGGAGGACTTCACCAGGGCCGAGCCCATTTACAGTGCCATCCACAAACCTCATGGGGACACCAGCCCTCCCTCCCCCCATCTGTGCAGCAGGGGGTCTGGGGACGTGGGTTGCAGCCCCGCCCCGCCTGCTCTGTGTCAAAGCCTGGTCCCGTACACCGGCAGGGAGCCGCGGAAGATTCTGCTACACAAGGGTTCCACAGGTTTGGGATTCAACATTGTGGGCGGGGAGGACGGAGAGGGCATCTTCGTGTCTTTCATCTTGGCAGGAGGGCCAGCCGACCTGAGCGGAGAGCTGAGGAGAGGAGACCGCATCCTGTCGGTGAATGGTGTAAACCTGCGCAATGCTACCCATGAGCAGGCGGCTGCTGCACTGAAGAGGGCTGGACAGACGGTGACCATCATTGCCCAGTACAGACCAGAAGAATACAGTCGTTTTGAGTCCAAGATCCACGACTTGAGGGAGCAAATGATGAACAGCAGCATGAGCTCTGGCTCCGGCTCCCTCCGCACCAGTGAGAAACGCTCCCTCTACGTCAGTGGGCTTATAATTAGTGTTTCCTTGGAGAGTGGTGGATTTACCTGTCTGACAAGGGCACTTTTTGACTATGACAGGACCAGGGACAGTTGCCTCCCTAGCCAGGGTCTGAGTTTTTCCTATGGGGACATCCTGCATGTCATCAATGCCTCCGATGATGAGTGGTGGCAGGCACGGCTGGTTACACCCCATGGGGAGAGTGAGCAAATTGGGGTCATACCAAGCAAGAAAAGGGTGGAAAAGAAAGAGCGTGCACGGTTAAAAACAGTCAAGTTCCACGCAAGGACGGGCATGATTGAGTCTAACAGGCCAGTCAAAGTGAAGCGCAAAAAAAGCTTCAACCTATCACGCAAGTTCCCGTTTTACAAGAGCAAGGAGAATATAGTGCAGGAGTTGGTGGAGACCGAACAGTGCTTGACATCCAACACCAGTGACAGCGAAAGCAGCTCCAAGGGTCAGGAAGACACAATTCTATCATATGAGCCAGTGATTCGACAGGAGATTCATTACACAAGGCCTGTGATTATCCTGGGTCCAATGAAGGACAGAGTAAACGATGACTTGATCTCGGAATTTCCTCACAAGTTTGGATCCTGCGTTCCACATACAACTCGTCCTCGGCGAGAGAATGAGATGGACGGGCAGGACTACCACTTTGTGGCTTCAAGGGAGCAAATGGAGAAGGACATTCAGGACAACAAATTTATTGAGGCCGGCCAGTTCAATGAGAATCTGTATGGGACCAGCATCCTGTCTGTTCGGGCAGTGGCTGAAAGGGGGAAACACTGTATCCTGGATGTGTCTGGGAATGCCATAAAGCGACTGCAGCAAGCACAGCTCTATCCAATCGCCATTTTCATCAAGCCAAAATCTGTGGAGGCCCTAATGGAAATGAATAAGAGGCAGACATATGAGCAAGCCAATAAAGTCTTTGATAAGGCAATGAAGCTTGAACAAGAGTTTGGAGAATATTTCACAGGGAAACCTGAGCGAATCCTTTCATGCGTTTCGGACGGACTTGATGATGATGATGATGAGAACGTCTTACCGAAGCGAGAACGGGGAGTCGGAGATGGAGACACGAGCGGAAACCTTGTATATGTTCATTCGGTTTCATTGAAAAAGACATTCGCGAATGCTGTGCGAGGTTTTCTACGAGGACTAGATACAGATCAAGCCTGCTGATGGTACCGTCACTGCTCCTGTTTATAAGCGGAGAAACTTCAAAACTGATGGTGATCTTCAGTACTCACAAACCAGCTCGCTTTATTCGATCGGCTGCCTGGCCATTTGTATGGCGACACGGTCGGAGACAGAACAAAATGGAAAACGGTGTTCGAGTCTATACATTTATATTACTGACATCACGTGGAAAATAAA

Function

GO:

id name namespace
GO:0097120 receptor localization to synapse biological_process

KEGG:

id description
K12075 DLG2; discs large protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9092 lncRNA downstream 100148 11621182 ~ 11621419 (-) True G8255
TU9091 lncRNA downstream 100750 11620559 ~ 11620817 (-) True G8254
TU9090 lncRNA downstream 101200 11620101 ~ 11620367 (-) True G8253
TU9083 lncRNA downstream 101822 11618854 ~ 11619745 (-) True G8246
TU9088 lncRNA downstream 106602 11614726 ~ 11614965 (-) True G8251
TU9080 lncRNA upstream 6205 11765956 ~ 11784772 (-) True G8243
TU9050 lncRNA upstream 118769 11878520 ~ 11891383 (-) False G8218
TU9052 lncRNA upstream 131427 11891178 ~ 11891383 (-) False G8218
TU9053 lncRNA upstream 131427 11891178 ~ 11891381 (-) True G8218
TU9048 lncRNA upstream 134166 11893917 ~ 11896970 (-) False CI01000000_11894953_11903178
CI01000000_11661528_11696310.mRNA mRNA downstream 25257 11661013 ~ 11696310 (-) True CI01000000_11661528_11696310
CI01000000_11650257_11652811.mRNA mRNA downstream 66841 11649904 ~ 11654726 (-) True CI01000000_11650257_11652811
CI01000000_11644676_11648034.mRNA mRNA downstream 73533 11644046 ~ 11648034 (-) True CI01000000_11644676_11648034
CI01000000_11603826_11605350.mRNA mRNA downstream 116217 11603800 ~ 11605350 (-) True CI01000000_11603826_11605350
CI01000000_11600258_11602519.mRNA mRNA downstream 118987 11599982 ~ 11602580 (-) True CI01000000_11600258_11602519
CI01000000_11788953_11800880.mRNA mRNA upstream 29152 11788903 ~ 11801346 (-) True CI01000000_11788953_11800880
CI01000000_11815586_11816295.mRNA mRNA upstream 55216 11814967 ~ 11817364 (-) True CI01000000_11815586_11816295
CI01000000_11821402_11828549.mRNA mRNA upstream 61572 11821323 ~ 11828549 (-) True CI01000000_11821402_11828549
CI01000000_11847606_11852314.mRNA mRNA upstream 86887 11846638 ~ 11852727 (-) True CI01000000_11847606_11852314
CI01000000_11855933_11866514.mRNA mRNA upstream 95859 11855610 ~ 11866885 (-) True CI01000000_11855933_11866514
TU8948 other downstream 680658 11040269 ~ 11040909 (-) True G8125
TU8770 other downstream 893972 10827450 ~ 10827595 (-) True G7949
TU8769 other downstream 1307054 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 5318042 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 5720798 6000407 ~ 6000769 (-) True G3716
TU9592 other upstream 1525573 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 1544525 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 1967049 13726800 ~ 13727090 (-) True G9036
TU10603 other upstream 2581251 14341002 ~ 14346534 (-) True G9602
TU10602 other upstream 2625606 14483120 ~ 14498594 (-) True G9601

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015605 False 2568 mRNA 0.53 20 NC_007125.7 33071560 ~ 33177935 (-)
bowfin (Amia calva) AMCG00021319 True 6017 mRNA 0.45 20 CM030130.1 14341482 ~ 14378877 (-)