RNA id: CI01000000_11788953_11800880.mRNA



Basic Information


Item Value
RNA id CI01000000_11788953_11800880.mRNA
length 1647
RNA type mRNA
GC content 0.49
exon number 9
gene id CI01000000_11788953_11800880
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11788903 ~ 11801346 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTGATTAAATGGCACTGGACACCAGCAGCGCCTCCATGTTCCTCTCTGGGTTTGAGACTGCAGCAATCCTGCATGTTCTCAGCTGCAGTGTCCATCTCGTAGCTGAGCTGATGATAATATGACTGCAAACCTGGGGCTTGGCAACCATTTTTCAATTCAGTTCATGGTGGTCCAGTGAAGGCAATGATAAAAACGGTAAATTTGCTTTGTGTTTTGTTATATGTTGCCTGAAAGCAGTTTTTATGATTTTAGATGTGACTTTATTTGTGCCTTTTTTTTTTTTTTGCATCAACTTAAATGGGTGTGGCTTGGCCTAATGCTGCAAACCTGCATGCCTTTGTGTGTTTGTGTTTATATGAACACACACTGAGAGTCAGAATAGGACAGATCCTAAAAGAACATTCTAGAGTTGAGTTTATTACCATTTTGGAAGGGAAAGTGAGAGTCTTTGTTCCGTCTGCTGTCATGGCCTTTTCCAAAGACTGCCCTCTGCTGCCTGTGGCCTGTGACTGCGGCATAAATTATGATAAAGAGACTTCGGGTGAAGAGGGTGTGTCACGTGTGCGTGTGACCAGCAGGAGGAGCTCTCAGAAGGTGGAGAGAGTGGCTGGACTAGTAAGCCGCTCCCATGTGGAGGCACCAAAGTTTTTCAGAAACACTCACAACAATCAGGTTCTACTATATCATGGCAGCTCTCATTTTCATGTCCTCCCAATCACAGCACCCCCAGCGGCATGTGGCGGCACAGTGCCTTCGGGCACTGGCGTTTCAGATGAGCGGAGATCTAGTGCGAGGGATGGGGGCCTATTAATAGGAGTCACAGCCTTCACAGGCACTTTAGTTTATTGTGTCAGTGTGAAGGAGCAACGACTCGATGAGTTACAAGCATTTAGTGAAACCGTGGAGCTGAATAATGTGCTCTCTGCATCTCCATTCGGGTTTTGTGTGCTGGCTGATTTTCAAGTGAGCTGGCCCTTTAAGAGCAGTCACTTAAGCAGTCAGTCCTGTGTTGGTGCTGCTGCTGATGGCTGTGCTCATTATTTTTCCAAACCTTTTGCATCGACCGGAGGAAGACTACCAAGCTTTTTCTATTTTTCATCGCCCTGTTGCTACCTCCTCATCTCGTTTTCTGGATCAGGAGGAACAAAGAGGAGGATAACAGGGTTCGTGAAGATTCCTGCCATTTGTGCTACCGTTCCGATGGATGCCCCGGCATATGGAGACTGGCAGCCCGAGCCCTACGGATACCCGGCCGGCTATGGGGGCGGCCAGACCTTACCGCCCCAAACCTCGGGTGGAGGAGGGGGAATGGGTGGAGGGGGCACTTTGGGGAGAAGTAAAGGGAAAATGATGTCAGCTGGGGGTCCTGGAGGTCCCAACCCCAAGAACCAATCCAAGGGCGGCCCCAAGGTGAATGGTAACAACTCAGGAGGGCAAGGAGGATGGTGGCCCGAGTGCACCTGTTCCAACCGGGACTGGTACGACCAGGGAGAGGGAATGCAGAGAGAGTGGCGGAGACGCAGAGAAAATGGAGGAGGATGGGAGAGGCATCAGTCAAAAGCAGTGCAGTTTTTCACTCATTCGCTTTTGTTTTAATAATGAATTATGCATGTGTTCTTGGAAGCATTTGCTGTAAAACAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9080 lncRNA downstream 4131 11765956 ~ 11784772 (-) True G8243
TU9092 lncRNA downstream 167484 11621182 ~ 11621419 (-) True G8255
TU9091 lncRNA downstream 168086 11620559 ~ 11620817 (-) True G8254
TU9090 lncRNA downstream 168536 11620101 ~ 11620367 (-) True G8253
TU9083 lncRNA downstream 169158 11618854 ~ 11619745 (-) True G8246
TU9050 lncRNA upstream 77174 11878520 ~ 11891383 (-) False G8218
TU9052 lncRNA upstream 89832 11891178 ~ 11891383 (-) False G8218
TU9053 lncRNA upstream 89832 11891178 ~ 11891381 (-) True G8218
TU9048 lncRNA upstream 92571 11893917 ~ 11896970 (-) False CI01000000_11894953_11903178
TU9051 lncRNA upstream 92835 11894181 ~ 11896970 (-) False CI01000000_11894953_11903178
CI01000000_11721762_11759751.mRNA mRNA downstream 29152 11721567 ~ 11759751 (-) True CI01000000_11721762_11759751
CI01000000_11661528_11696310.mRNA mRNA downstream 92593 11661013 ~ 11696310 (-) True CI01000000_11661528_11696310
CI01000000_11650257_11652811.mRNA mRNA downstream 134177 11649904 ~ 11654726 (-) True CI01000000_11650257_11652811
CI01000000_11644676_11648034.mRNA mRNA downstream 140869 11644046 ~ 11648034 (-) True CI01000000_11644676_11648034
CI01000000_11603826_11605350.mRNA mRNA downstream 183553 11603800 ~ 11605350 (-) True CI01000000_11603826_11605350
CI01000000_11815586_11816295.mRNA mRNA upstream 13621 11814967 ~ 11817364 (-) True CI01000000_11815586_11816295
CI01000000_11821402_11828549.mRNA mRNA upstream 19977 11821323 ~ 11828549 (-) True CI01000000_11821402_11828549
CI01000000_11847606_11852314.mRNA mRNA upstream 45292 11846638 ~ 11852727 (-) True CI01000000_11847606_11852314
CI01000000_11855933_11866514.mRNA mRNA upstream 54264 11855610 ~ 11866885 (-) True CI01000000_11855933_11866514
CI01000000_11870031_11891782.mRNA mRNA upstream 67386 11868732 ~ 11892256 (-) True CI01000000_11870031_11891782
TU8948 other downstream 747994 11040269 ~ 11040909 (-) True G8125
TU8770 other downstream 961308 10827450 ~ 10827595 (-) True G7949
TU8769 other downstream 1374390 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 5385378 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 5788134 6000407 ~ 6000769 (-) True G3716
TU9592 other upstream 1483978 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 1502930 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 1925454 13726800 ~ 13727090 (-) True G9036
TU10603 other upstream 2539656 14341002 ~ 14346534 (-) True G9602
TU10602 other upstream 2584011 14483120 ~ 14498594 (-) True G9601

Expression Profile