RNA id: TCONS_00012778


Basic Information

Item Value
RNA id TCONS_00012778
length 4615
RNA type mRNA
GC content 0.47
exon number 19
gene id XLOC_006624
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24781188 ~ 24826607 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcatatatatatatatatatatataatatataataaagccGAACAATTCAAATGATTCGATTCAACTGCATGAATCAAATCATCCATAACTCTGCATGGCAAACATCGACTGCGCTTGCGCCAGTTTTTCGACATTCGTGCACGCGCCTTTCCTAGCCAAACGCACGCGCTCTGAAATCCTTCTGCAACATCCACGAGAAGTTGGTCACGAGAGACCCAAGCGACCATTGAACGAGGCGCGAAAAACATCCGTTTCGGCACCGCGAGCAGCGTCGACTGGCATGCCTGTGCCCTGAAATTGTTTATTCGGTTTTATCGAAACTGTTGTGGTTGGCTAAGCTGTAAAACACACCCCTCCCGAGGAGTAGACTGAGCTCAGACTGGAGTTTGGTCATCAGCATCCGCTCCGCTTTTTACGGTGTGCTAGCTAATTATCTGCCTCCTTCAAATGGATTTTACTGTATTGTAGTTTGTTTAAACGACATATTTGAATACGCGACGCTTGTTTGATTGAGAAGCTCGTTTTTTAGCAGACGGGTAAGGCAAAAGCAGAGGATCACACACACATGTAGCCGCTGTGAGGCTAGCAGAGGAAGTGGACTGTTACTTTTCCATCCCTGTATGCTGGAAGGAGTCGCTCGCCTGGATGAATCACTGTTATGGAGACGCGAAATGCCACATAAAGGTTGATCTCTGTCTCTTGCACAGAGACTAATATATTCGCTGTCATTAACAGTTTCACTTGGAGCTGTCTGCAGCTGCACTGGTGACGTTAAATGAGTTAGCAGGGGATCGATCCTCCACATGCTAGCCCATTAGCCAACTCCCCAAGTGATTCGTCTAGCACAGTATTAACAGTTTATGTCGTGTCAGTCTATTTTTTGTAGACCATAGACCTTTAGATCGCGATTGGAACATGTCCTTTTTCAATTTTCGGAAGATATTTAAGTTGGGAacggagaagaagaagaaacagtATGAGCATGTCAACAGAGACGTCAACCCCGAGGATTTTTGGGAGATCGTGGGAGAGCTTGGGGATGGAGCCTTTGGCAAAGTCTACAAGGCTCAGAACAAACAGACTGGGATCTTGGCTGCAGCTAAAGTGATCGATACCAAAACAGAAGAGGAGCTTGAGGACTACATGGTGGAGATCGACATCCTCGCCTCCTGTGACCATCAGTATATAGTCAAACTGCTGGATGCTTTCTATTATGAGAGCAAACTCTGGATTCTCATTGAGTTTTGTGCTGGAGGAGCGGTAGACGCTGTGATGTTGGAGCTGGAGCGGCCACTGACAGAGCCTCAGATCCGGGTGGTGTGTAAACAGTCGCTGGAGGCGCTGGTTTACCTCCATGAGAATAAGATTATACACCGGGACCTGAAGGCTGGAAATATTCTCTTTACCTCAGATGGAAACATCAAATTGGCTGACTTTGGAGTGTCTGCAAAGAATACAAAGACCCTACAGAGAAGAGACTCTTTCATTGGAACGCCATACTGGATGGCACCCGAGGTGGTGATGTGTGAGACGTCAAAGGACAGACCATACGACTACAAAGCGGACATCTGGTCCCTGGGGGTGACGCTGATTGAGCTGGCACAGATCGAGCCACCCAACCACGAGATGAACCCAATGAGAGTCCTGCTAAAAATAGCAAAGTCTGAGCCCCCCACTCTGGCATCTCCATCACGATGGTCTCCTGAGTTCAGTGATTTCTTGCGGAAAGCACTGGATAAGAATGTAGACAACAGGTGGAGTGCCTTGCAGCTTTTACAGCATCCATTTGTTTCTAGTCTAGTGGATAACAAACCACTCCGAGAACTAATTGCTGAAGCTAAAGCCGAAGTGTTTGAGGAGTTTGAAGAGGgaaaagaggaagaggaggaagaagagccCGAGCCCCAATCGGCAGTGCAAGGACACAAACGTGCATTATCAGACACCAGTGTTGGCAGCTCAGAGGATGAGAGACAAAATCAGAACACGCCAACTCTCGAGTCGGTCACAGAGAGAGCTGAACCTGAAAGAAAACCTGAGGATCGAGCTTGTGACAAGACATCTGCCATGGTGGTGGATGCTAACGAATCTAACCATCTTGAGGATGGGAAGATAGTTGAAGCCAATGTTTCAGACACCAGCGCTGAGGAATTACGTTCTGGTGATGAGCTCATATCAAAGCAAGAAGAATCTCCTATGCCAGTTAGCACAGAAGGGGGGGTTACTGATCAGCCGAATGCTCCAACAGCAAATGACACTAACCTCCAAGAGATTGTAACTGTCAGTGAGGAAACTGGtgaggaggaaaagaaagaagtgAAGGTGGAAGAGAAACTAGAGAAGAAAGAAGAGGAGTCTGAAGAAATTAATATGAAAGCCAAAGCACAAAGCATTACAGATGAAGAAAAGGAGCATGCCTTACCTTCAGATGAGGCTGAACCGAAGAATAAATCCGATGGTGTTACTGAAGAAGCCATTACTGAACTAATTGAAGTTACAGAAAAAACTGAAGACAAGCTTGAGAATGAAGAAGAGGTGCATGGAAAGGAACCAGAAGAAGATAAGACAGTTACCTCAGCTGATGTTCCTACAGAAAAATTGAAGGAGCAAACAGAAACTTTACCAGATGTTTCTACAGAGGAAGTAAAGAAGGAGCAACCGGAAGCTTCACCAGATGTTTCTACAGAGGAAGTAAAGGAGCAACCGGAAACTTTACCAGGTGCTTCTTCAGAAGAAGTAAAGAAGGAGCAACCGGAAACTTTACCAGATGCTTCTTCAGAAGAAGTAAAGAAGCAACCAGAACCTTCACCGAAAGGTTCTACAGAAGAAGTAAAAGAGGAGCAACCGGAGACTTCACCAGAAGTTTCTAAAGAAGTAAAGGAAGATCAGTTGGTCCCAGAGGACCAAAATAAAACTGAAGAAAAGGCTGAGATTACAGAACCCAGGGGGGTAGATGTGGTAGAGGACATCTCTCTGAGTAAAGTTCCTGTTGTTGTCATTAATGGTGTGAAAGAAGAGGAGGTCAGTGCTACAGAAGAACCTGCAGAAGCCCCTGAAGACAGACCAGAGATCCAGGAAGCCCCTGCCATGCCTGAAAGTGACCACAATACAGTAGATGTGGCAAAACCAGATGCCGAAAAGGAAAAAGACTCCGATTCAGGCAGCAGTTCTGCTGCAGATACTAATAGCATTGATATTAATCTGTCCATTTCCAGTTTCCTTTCCAAGAGCAAAGAAGGATCTGTTTCAATACAGGACATCAAACGCCAAAAGAAAACCCTGAAAAAGACTCGCAAGTTTTTGGTCGACGGGGTGGAAGTCAGTGTCACCACATCCAAGATTGTCACAGACAATGACACCAAGAGTGAGGAACTGAGATTCCTGAGGCGCCAAGAGCTACGAGAACTGAGGCTGCTGCAAAAAGAGGAGCAAAGGGCTCAACAGCAGCTCAGCAATAAACTGCAGCAGCAGAAAGAGCAACTCTTCAGACGCTTTGAGCAGGAAATGTCGGGAAAGAAACGGCAGTATGACCAAGAGGTGGAGAACCTTGAGAAACAGCAGAAGCAGACTATAGAGCGTCTGGAGCAGGACCACACCAACCGACTAAGAGACGAAGCCAAAAGGATCAAAGCTGAGCAGGACAAGGAGCTCTCCAAGTTCCAGAACATGCTGAAGAATCGCAAAAAAGAGGTCAAACAAGAGGTCGGACTGTCCCCCAAACACATGAGAAAAGAGCTCATGAAACGCTTAAAAGAAGACCTAGCTGCCATTCAGCATGGAGAGGAGCAAGAGTTTCTCCAGAGACAGCAGCAGGAGCTGGATGGAGCTCTGAAGAAGATCATCCAGCAGCACAAACTGGAGATCGCCACTATAGAAAGAGACTGTCTCAACCACAAGCAGCAGCTCATGAGAGCAAGAGAAGCAGCCATGTGGGAGCTGGAGGAGCGCCACCTGCAGGAGAAACACCAGTTACTGAAGCAGCAGCTGAAGGATCAATACTTCATGCAGAGACATCAGCTCCTCAAGAGACATGACAAGGAGATGGAGCAGATGCAGGGTTATAACCAGCGGTTGATTGAGGAGATGAAGAACAGACAGGCGCAGGAACGAGCTCGACTGCCGAAGATCCAGCGCAGTGAAGCCAAGACGCGGATGGCCATGTTTAAGAAGAGCCTCCGCATCACTGGCACCGGGACGCCAGAGCAGGATAGAGAAAAAATCAAACAGTTTGCAGTTCAGGAGGACAAGAGACAGAAGAATGAGAGACTTCATCAGCATCAAAAACATGAGAACCAGATGAGAGACCTGCAGCTGCAGTGCGACTCCAACATCAGAGAACTTCAGCAGATGCAGAATGAGAAATGTCACCTGCTGATTGAGCATGAGACTCAGAAGCTGAAGGAGCTTGATGAGGAACACAGTCAGGAGCTAAAAGAATGGAGGGAGAAGCTTCGGCCACGGAAGAAGGCTCTGGAGGAAGAGTTCACCCGTAAACTCCAGGAGCAGGAAGTCTTCTTTAAGATGAGCGGAGAGTCCGAATGTCTCAATCCCAGCACCCAGAGCAGAGTCTCGAAATTCTACCCTATTCCTAGTGTGCACTCCTCCGGCTCTTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050411-66 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human SLK (STE20 like kinase).

Ensembl:

ensembl_id ENSDART00000087786

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013788 lncRNA downstream 159339 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012771 lncRNA downstream 175937 24602410 ~ 24606627 (-) False XLOC_006620
TCONS_00013789 lncRNA downstream 175937 24604380 ~ 24606627 (-) True XLOC_006620
TCONS_00012770 lncRNA downstream 194344 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013787 lncRNA downstream 204542 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00013790 lncRNA upstream 383551 25210158 ~ 25214454 (-) False XLOC_006629
TCONS_00012796 lncRNA upstream 394568 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012801 lncRNA upstream 646599 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012804 lncRNA upstream 652039 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012809 lncRNA upstream 708606 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012776 mRNA downstream 37276 24742724 ~ 24745288 (-) True XLOC_006623
TCONS_00012773 mRNA downstream 64946 24701406 ~ 24717618 (-) False XLOC_006622
TCONS_00012774 mRNA downstream 65176 24701758 ~ 24717388 (-) False XLOC_006622
TCONS_00012775 mRNA downstream 65199 24706818 ~ 24717365 (-) True XLOC_006622
TCONS_00012772 mRNA downstream 113306 24665334 ~ 24669258 (-) True XLOC_006621
TCONS_00012782 mRNA upstream 4130 24830737 ~ 24870285 (-) True XLOC_006625
TCONS_00012783 mRNA upstream 44443 24871050 ~ 24874950 (-) False XLOC_006626
TCONS_00012784 mRNA upstream 44443 24871050 ~ 24880525 (-) False XLOC_006626
TCONS_00012785 mRNA upstream 49320 24875927 ~ 24877577 (-) True XLOC_006626
TCONS_00012786 mRNA upstream 54665 24881272 ~ 24906307 (-) False XLOC_006627
TCONS_00012759 other downstream 496174 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 655385 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 821158 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012744 other downstream 1268761 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 1924109 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012791 other upstream 232126 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 364969 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012805 other upstream 703927 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 719069 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1740459 26567066 ~ 26567184 (-) True XLOC_006646

Expression Profile

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