Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012786 |
| length | 1938 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 6 |
| gene id | XLOC_006627 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 24881272 ~ 24906307 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0016573 | histone acetylation | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003712 | transcription coregulator activity | molecular_function |
| GO:0004402 | histone acetyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000607-52 | Predicted to enable histone acetyltransferase activity; histone binding activity; and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone acetylation; nucleosome assembly; and regulation of transcription, DNA-templated. Predicted to be part of nucleosome. Is expressed in forebrain. Human ortholog(s) of this gene implicated in bipolar disorder; blepharophimosis-intellectual disability syndrome, SBBYS type; breast cancer; and leiomyoma. Orthologous to human KAT6B (lysine acetyltransferase 6B). |
| ensembl_id | ENSDART00000148191 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00012780 | lncRNA | downstream | 90007 | 24786959 ~ 24791265 (-) | False | XLOC_006624 |
| TCONS_00013788 | lncRNA | downstream | 258047 | 24590420 ~ 24623225 (-) | True | XLOC_006619 |
| TCONS_00012771 | lncRNA | downstream | 274645 | 24602410 ~ 24606627 (-) | False | XLOC_006620 |
| TCONS_00013789 | lncRNA | downstream | 274645 | 24604380 ~ 24606627 (-) | True | XLOC_006620 |
| TCONS_00012770 | lncRNA | downstream | 293052 | 24585224 ~ 24588220 (-) | True | XLOC_006618 |
| TCONS_00013790 | lncRNA | upstream | 303851 | 25210158 ~ 25214454 (-) | False | XLOC_006629 |
| TCONS_00012796 | lncRNA | upstream | 314868 | 25221175 ~ 25222494 (-) | True | XLOC_006629 |
| TCONS_00012801 | lncRNA | upstream | 566899 | 25473206 ~ 25477370 (-) | False | XLOC_006632 |
| TCONS_00012804 | lncRNA | upstream | 572339 | 25478646 ~ 25484733 (-) | True | XLOC_006632 |
| TCONS_00012809 | lncRNA | upstream | 628906 | 25535213 ~ 25540686 (-) | False | XLOC_006634 |
| TCONS_00012784 | mRNA | downstream | 747 | 24871050 ~ 24880525 (-) | False | XLOC_006626 |
| TCONS_00012785 | mRNA | downstream | 3695 | 24875927 ~ 24877577 (-) | True | XLOC_006626 |
| TCONS_00012783 | mRNA | downstream | 6322 | 24871050 ~ 24874950 (-) | False | XLOC_006626 |
| TCONS_00012782 | mRNA | downstream | 10987 | 24830737 ~ 24870285 (-) | True | XLOC_006625 |
| TCONS_00012779 | mRNA | downstream | 54665 | 24782564 ~ 24826607 (-) | False | XLOC_006624 |
| TCONS_00012788 | mRNA | upstream | 11789 | 24918096 ~ 25198025 (-) | False | XLOC_006628 |
| TCONS_00012789 | mRNA | upstream | 12287 | 24918594 ~ 25199260 (-) | False | XLOC_006628 |
| TCONS_00012790 | mRNA | upstream | 13721 | 24920028 ~ 25196758 (-) | False | XLOC_006628 |
| TCONS_00012792 | mRNA | upstream | 165527 | 25071834 ~ 25198093 (-) | False | XLOC_006628 |
| TCONS_00012794 | mRNA | upstream | 305632 | 25211939 ~ 25284379 (-) | False | XLOC_006629 |
| TCONS_00012759 | other | downstream | 594882 | 24283670 ~ 24286390 (-) | True | XLOC_006607 |
| TCONS_00012755 | other | downstream | 754093 | 24127063 ~ 24127179 (-) | True | XLOC_006605 |
| TCONS_00012752 | other | downstream | 919866 | 23961292 ~ 23961406 (-) | True | XLOC_006602 |
| TCONS_00012744 | other | downstream | 1367469 | 23488297 ~ 23513803 (-) | False | XLOC_006598 |
| TCONS_00012725 | other | downstream | 2022817 | 22856335 ~ 22858455 (-) | True | XLOC_006586 |
| TCONS_00012791 | other | upstream | 152426 | 25058733 ~ 25199225 (-) | False | XLOC_006628 |
| TCONS_00012793 | other | upstream | 285269 | 25191576 ~ 25198063 (-) | True | XLOC_006628 |
| TCONS_00012805 | other | upstream | 624227 | 25530534 ~ 25530648 (-) | True | XLOC_006633 |
| TCONS_00012810 | other | upstream | 639369 | 25545676 ~ 25548614 (-) | False | XLOC_006634 |
| TCONS_00012832 | other | upstream | 1660759 | 26567066 ~ 26567184 (-) | True | XLOC_006646 |
