RNA id: TCONS_00012787


Basic Information

Item Value
RNA id TCONS_00012787
length 978
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_006627
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24881272 ~ 24906307 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTGAAACTGGCCAATCCCCTGTACACAGAGTGGATTCTTGAGGCTATTCAGAAGATCAAAAGGCAGAAGCAGCGGCCTTCGGAGGAGCGGATTTGCCATGCTGTCTCATCTACACGTGGACTAGACAAGGGCGTCGTACTTCATCAGCTGGAGCTCGCTGTGAAGGATGGATCCATCCTTAAGGTTACCAGCAAAGGGTGCGCTTCGTACAAAGACCCGGATAACCCAGGAAGGATTACGCCTTTCAAGTTGGGAGGCTCTGGCACGGTCTCTGTTGGATCTGTGATACCTGCAGGAGATCTGCGTCATGTGGATTGGAATAAAATCCTTAGGAGGGCTATTGAAGGTCTGGGCGTCCCGTCTGGCTCCTCTCTAAGGAACATTGAGAGATTCCTTAGAAGCCAGGGCGACCTGGTGAATGTTGTGGCAAACCCCAGGTTTCAGCAGAGGCTGAGGCTAGCTGCTAAGCGGGCGGTTAACAACGGGCGCCTGCTCAAAGATGGGCCGCTCTACAGGTTGAACAGTGGTGGACTTGGAGGAAAGTCTTGCTTCAGGAACGTGGGGGTCTTTGGTGTCGACCTCCCACCTGTGACACTACTCCCCCATGAAAGAGACCAGCCACGTGCTGACCCCATACCCATATGCAGCTTCTGTTTGGGCACAAAGGAGTCGAATCGAGACAAGAGGCCAGAGGAGCTGCTGTCTTGTGCAGACTGTGGAAGCAGCGGCCATCCATCATGCCTGAAGTTCTCCGCTGATTTGACTGCAAATGTCAAGGCCCTGCGATGGCAGTGCATCGAATGCAAAACATGCAGTTCCTGTCAGATTCAGGGGAAGAATGCTGACGAGATGCTCTTCTGCGACTCCTGCGACAGGGGTTTCCATATGGAGTGCTGTGACCCACCGCTCTCCAGAATGCCAAAAGGTACATTAGGCCTTTGTTTGCCGCTGTGGGTTTTTCCATTCTCAAGGTGA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016573 histone acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-000607-52 Predicted to enable histone acetyltransferase activity; histone binding activity; and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone acetylation; nucleosome assembly; and regulation of transcription, DNA-templated. Predicted to be part of nucleosome. Is expressed in forebrain. Human ortholog(s) of this gene implicated in bipolar disorder; blepharophimosis-intellectual disability syndrome, SBBYS type; breast cancer; and leiomyoma. Orthologous to human KAT6B (lysine acetyltransferase 6B).

Ensembl:

ensembl_id ENSDART00000189810

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012780 lncRNA downstream 93816 24786959 ~ 24791265 (-) False XLOC_006624
TCONS_00013788 lncRNA downstream 261856 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012771 lncRNA downstream 278454 24602410 ~ 24606627 (-) False XLOC_006620
TCONS_00013789 lncRNA downstream 278454 24604380 ~ 24606627 (-) True XLOC_006620
TCONS_00012770 lncRNA downstream 296861 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013790 lncRNA upstream 303851 25210158 ~ 25214454 (-) False XLOC_006629
TCONS_00012796 lncRNA upstream 314868 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012801 lncRNA upstream 566899 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012804 lncRNA upstream 572339 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012809 lncRNA upstream 628906 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012784 mRNA downstream 4556 24871050 ~ 24880525 (-) False XLOC_006626
TCONS_00012785 mRNA downstream 7504 24875927 ~ 24877577 (-) True XLOC_006626
TCONS_00012783 mRNA downstream 10131 24871050 ~ 24874950 (-) False XLOC_006626
TCONS_00012782 mRNA downstream 14796 24830737 ~ 24870285 (-) True XLOC_006625
TCONS_00012778 mRNA downstream 58474 24782564 ~ 24826607 (-) False XLOC_006624
TCONS_00012788 mRNA upstream 11789 24918096 ~ 25198025 (-) False XLOC_006628
TCONS_00012789 mRNA upstream 12287 24918594 ~ 25199260 (-) False XLOC_006628
TCONS_00012790 mRNA upstream 13721 24920028 ~ 25196758 (-) False XLOC_006628
TCONS_00012792 mRNA upstream 165527 25071834 ~ 25198093 (-) False XLOC_006628
TCONS_00012794 mRNA upstream 305632 25211939 ~ 25284379 (-) False XLOC_006629
TCONS_00012759 other downstream 598691 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 757902 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 923675 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012744 other downstream 1371278 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 2026626 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012791 other upstream 152426 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 285269 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012805 other upstream 624227 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 639369 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1660759 26567066 ~ 26567184 (-) True XLOC_006646

Expression Profile

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