RNA id: CI01000000_15158265_15165627.mRNA


Basic Information

Item Value
RNA id CI01000000_15158265_15165627.mRNA
length 2485
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000000_15158265_15165627
representative False

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 15157022 ~ 15166585 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAACACAAAAGGAGAATTTTTGGACAAAATATATTTGAGTTTATATACATGTAATGTATATGTACAGTTTAGTATTATTAAAAGATAATAACACTATTACTAATTCTACTACTAATAATACTGTACAACTCACTAAGGAATGATGAGCTGCTGGGTTCATGAATATTAATCAAGCTATCAGTGTTCACTGGAACTGATTTGCTGAAATCAAAACAGAGACAGTAATAGATGAGCGCCAGCCAATGAGATTGCCGTTTACACATTAGTTCCACCCACTACCGGAGAAACCGACATCTCTTTTGTATGCTCTTAATTGCTAATAATTCCAAATGAGCTCCGTTATTTTGAAAGGAAAATACAACAAAGAATATTGTTACATGTAGCGCGTTGATTCTGCCTGGTAAGTAAGACTCTCGCTCTCTCTCTCAGAAACAGCGCTCTCAGCAAAGCGACGGTGAATCGCGCGCCTTCACACTAGAGTTTGCGGTACGTCAAATACAGGTACACTGCGCATCCATTGAGCTGAACTGAAATAGTACAGATCACAAAACTCTCAAGCGCTCAGTCAGCGTTGAGGGAGTGAAAATATATCTATGCTAAACTTATACTACTTAGCCTCTAAAACGCACACTGGCGAGTAAAATCTAAGAATTTATTAGCCAATGGCTGGTGATAGACATTATTTAGTCGCCCAGAATGAAGATTTACTCTCTTTGTAGAGGTTTGCAATGAAAGTGAATGGTGACCAGGAGCTGCCAAACTCTAAAAAGGACCAAAAAAGCACCATAAACACATCATTAAAGTCGTCCAAATTAATCATTCACTATATTTCAAGTCTTCTAAAGTCATATAACTTTGTGTGAGGAATAGACAAACATTTAAGTCGTAAATCACAAAAGGACTTGCTATAGTCACCATTCACTGTCATAGTGTGGAAAAGAGCAGCTTGGACGGTTTTAAATTGCTCTTTTTGTGTTCTACGAAACAAACTGATGGTGAGTAAATGATGATTTTGTTTTTTAGTAAACTATCCCTTATTGCAACATTAGTCCATGCATTTTGTCATTTTTGGTAAAAAGGCTCACTAAACACAAAGCAAGGTTTGATTTAAGACTTTAGTTAAACACACAGATGTTTGTAATGTCAGTATAACATAGTCCAGAGGATGCATTGGATAAACAAGACCACGATTTCTAAAGTTTTTTCATACACTCATTTCTTTCTATATACAGCCCATGATGTGGGTGGACAACACTAACAACATTGGCTATAAACATCCTAACGAATGTCGACATGTGGCGTCACTGCGTTACGTAGCTCACAACAGATTGTGCCACTCCACCCTCAACCCAGTTTCCTCTGTGAAAACCACAGCAAAACTGAGTCTTGGGGAGAGAAAAAACATTTTTGCATCAGCCGTTACTCTCGCAGTCATTGGCTGCTATAGCAACACGAGTCACAAAAATCGGCAAAGATTACTGGCTGCTCAAGATGTCATACCACCACTCCCCACACCCACATTACCACAACCAAAATTTCACACCAAGCTCTCCTCTCCAATTCAGACACTAATTCAGAGGATAACAGGAGATTACTGTTATACAACTCACAACAATATCACTTTTTATATTGAAACAGATGAAATAAAAGTGAAAGCCTTCTGCCTTTATCTCCTGGCCTATTTCCTGTGGGCTGATCCCTGCATCCTGAAAGTCTGTGCTGCCCCACCCTCTCCATCCGGACTGCCGCTCCTTAACCCTTCAGCACTGCAGAGAGCAGACAATCTCACTGGCATTGGACCTGCCTCAAAGATATCAATCTTTATCTTTTCCTGATAAATACGATATGTGATATGAGTCACTATGTGATTCCAGCTCAAAGATTTATCCTTATAGATAGGTTACTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTGACTTGCATACAAATGGAGCTGCATGATTCTGGTTAAATTGAGAATCACTTTTTTTTTTTTTTTTTCAAACAGAGATCACATTTCTTCCACAATACTGAACAGATAACTAAACAAAATAGTGCAATTTACTAGAGGTTCTTACTAAATGTTAATTGCTGCAGTCTATTTAAAATAGACGCCAAGTTACTTTTAAAAGGCGATTTGCTCTATTTTGATCGCTGCCGTAGACATCAGTGTTTATATCCAAACTATAAACTTTTATCCCAGTACTTCTGTGATAATATGAATATTTGTAACAGATTTGAATGTTTCTGTGTGATTTAGTCAAAGGTTTAATAGACACAGGTGAATCGTTGTCATTTGGGAATGAGATTGCATGGGTGTTCGATTAATCGTGCAGCTCAACATACAAAGGAGCTATTTGCATTCTGTGCAAATGGCCCCTTATGATGATTTTTGAAAGGATTTTTGAAGTTTCACATTTATAAGGAAAAGAACAGAGTGAGCATCCTGTACAGCATCTCCTTTTGTGTTCAATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10454 lncRNA upstream 187626 14966399 ~ 14969396 (+) True G9466
TU10392 lncRNA upstream 307642 14849134 ~ 14849380 (+) True G9404
TU10373 lncRNA upstream 315330 14775956 ~ 14841692 (+) True G9390
TU11020 lncRNA downstream 198796 15365068 ~ 15365385 (+) True G10004
TU11025 lncRNA downstream 221322 15387594 ~ 15387826 (+) True G10009
TU11026 lncRNA downstream 223461 15389733 ~ 15389999 (+) True G10010
TU11027 lncRNA downstream 223746 15390018 ~ 15390529 (+) True G10011
TU11042 lncRNA downstream 250201 15416473 ~ 15418308 (+) True G10026
CI01000000_15120586_15123050.mRNA mRNA upstream 33374 15120384 ~ 15123648 (+) True CI01000000_15120586_15123050
CI01000000_15091223_15092317.mRNA mRNA upstream 64451 15091009 ~ 15092571 (+) True CI01000000_15091223_15092317
CI01000000_14882756_14886030.mRNA mRNA upstream 270890 14882756 ~ 14886132 (+) True CI01000000_14882756_14886030
CI01000000_14857956_14858702.mRNA mRNA upstream 298239 14857956 ~ 14858783 (+) True CI01000000_14857956_14858702
CI01000000_14837947_14838141.mRNA mRNA upstream 318700 14837902 ~ 14838322 (+) True CI01000000_14837947_14838141
CI01000000_15519933_15528742.mRNA mRNA downstream 353661 15519933 ~ 15528895 (+) True CI01000000_15519933_15528742
CI01000000_15620007_15622711.mRNA mRNA downstream 453735 15620007 ~ 15622842 (+) True CI01000000_15620007_15622711
CI01000000_15684820_15696865.mRNA mRNA downstream 518223 15684495 ~ 15697115 (+) True CI01000000_15684820_15696865
CI01000000_15893372_15894283.mRNA mRNA downstream 725407 15891679 ~ 15894893 (+) True CI01000000_15893372_15894283
CI01000000_15964514_15964804.mRNA mRNA downstream 798055 15964327 ~ 15964961 (+) True CI01000000_15964514_15964804
TU10171 other upstream 922081 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 2978014 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 3020014 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 3911389 11244457 ~ 11245633 (+) True G7153
TU7753 other upstream 4176150 10978489 ~ 10980872 (+) True G7018
TU11228 other downstream 763994 15930266 ~ 15930562 (+) True G10201
TU12413 other downstream 2172882 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 2172882 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 2717681 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 2866467 18032739 ~ 18164112 (+) True G11521

Expression Profile