RNA id: TCONS_00013790


Basic Information

Item Value
RNA id TCONS_00013790
length 2217
lncRNA type sense_over
GC content 0.34
exon number 2
gene id XLOC_006629
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25210158 ~ 25284716 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGTGACTGTTTAGAGGCCTTTAACTATGTAGATTCAGGTTGGTGGACTTTTGGACATCAGCGTTTGGTTCTAGTTTCgaggtgatttttttatttaactgctGGTATTGGTACTCGGTACACTTACTTTGTCTTTACGGAGGCTATTTTTGTCCTGAATCTCACACTACTGAGGTATGGTGTTGGAATACACAGGAAGcagatttataaatatatatttttggtatgTTGGGTTTCCAAATTCCaggtatatatacataaatatctATTTTTTCGCATGATGAAGTTTTCTATTTTGTATTGGAGAAATATGGCACTACGCCTCTCTTGAACAATGTTGGGAGTTCGTTAATGAATTTAGTTTCGTTTTTGAAGAGGTGAATTTTCTTattgaaaatgtatatatttcgTACATATTTCACCAGATCGTTATCGCACATTTATTTTTAGTCGTGAACGTGCATCTTTAGTTgcgtttttgctttgcttttcagAATACCTGTGCTGTGGCTGGTGGTTTTTACGTTTTAACTCACTACGATGAACTGTTCTGAGCTCATGTTTATATGAACCATTGCTTAGCTATTTATTCATTAGGATAATGCCTATTTTTGATGGGTCATGCCATTACAGAGATGTATTTTGCATGGCATGGTTGATACCaaagatttcttttatttttacagttaataTATTTAGTAGCTTTGGAAATAATGTAAATCTATGTAGACATGCAAATGCTTAGATAGTGAACACTGAAATGTATTCGTCCTTTATACTTCACTCTTGTGAGAccgaatgttttttttgtttttgatttgttaGGCTCAAAAGAAAAGCACAATCCTCACAACAGTTGAACTGTTTCTCTCTTAGCTCAGTCTCTTTGCGGTTTACAGCGTTAATTTAGATGTTTCTCTCAGTGTGATTGTGTTTTCATTGTTGCGTATTGAAGATGAAGCTGTCTTAATGCATCTTTCATTTGAATAGAATGGGTAACAAGACCCAGGTGGCTTGTTTGTTCATGATACCTACAATTCGTGTTTGAAGACACTCATAGAGATACGTCAACAAAAAATAACAAGTCTTTCATCATTCGCATACCCTCATGCAGttctaaaacagaaaatattatgcaaaaataatacTGCATTGTTTGTTTTAGACTCCAttgactttaaagggatagttcacccaaacattaaaATTGAGTATTTActaaccctcaagtggtttcgaatctttatcagtttctttcttctgttcaacacaaaggaaagctgaaaacattgacttctatagtaggtaAAACAAATAGTAAGGAAGTCAAtatttacaggtttccaacatttttcaaaataacttcttttgtgttcaacagaagctcATAAAAGGTTTTCAAttagtaaacgatgacagaatttaaatttcttGGGTGATCCATCACTTTAATTGTATAGACATTTTTCATACAGGTTTTAAATGACATGAGGGTCAGTAAATTGCAGATTTGGCACTTTTTTTGGTGATGTGTCATTTTAGGATCTGTACAAAATCAATCGTGTGGAAAATTGTGCAATCGTAGTATAGAAAACTCAGTAGCACAACCTTTAGCTGAAGATCCGTGTCTTTCATACTTCATACAGCTACCGTAACTCTCCGACATGATGCTTTACTGCCTTTCATTCACTTAAATCTCTATCTACAAGTTAGATGTTTGAAAGAGTACCTTTCCAGCCCCTAATATAGTGCCTGGTTGTGAAAGTTTACAGGGCTGtatttgtactgtatgtgtattaGCATGTTTTGGGTTCTGAAGACATTTATAAAGGGTGATAGTACTGCTTTGTGAATGTATATAATGGATGACACTAATGTTGACCTTTATTTTCCCCCCGGTGTCACATAAAAAAGAACGTCTTATGTGCCTCAGATTATCGATAATAAAAAAGTTCTGTTAGGTGTTTTGCTTTGACACTTCACTACgcaaatttgtcaaataaaaggaCAAGTGAATGTCTCATTTGTAAATGCTACAACATTTCAGTTATTATACAAGGATTCAAATATTAATTTAGTAACTTTCAAGATGTTAGAATTAACAATTCTTTGATGAAGAATTAACAGTGAATTAATTCTTCAACAAAACTTTCCACCACCAGCACAAAATAgaaaaattcagctttttttctTCAGGGTTCACAAAAATACTAGCCA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0055074 calcium ion homeostasis biological_process
GO:0048869 cellular developmental process biological_process
GO:0008015 blood circulation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0031672 A band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012780 lncRNA downstream 418893 24786959 ~ 24791265 (-) False XLOC_006624
TCONS_00013788 lncRNA downstream 586933 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012771 lncRNA downstream 603531 24602410 ~ 24606627 (-) False XLOC_006620
TCONS_00013789 lncRNA downstream 603531 24604380 ~ 24606627 (-) True XLOC_006620
TCONS_00012770 lncRNA downstream 621938 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00012796 lncRNA upstream 6721 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012801 lncRNA upstream 258752 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012804 lncRNA upstream 264192 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012809 lncRNA upstream 320759 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012811 lncRNA upstream 332431 25546885 ~ 25548821 (-) True XLOC_006634
TCONS_00012789 mRNA downstream 10898 24918594 ~ 25199260 (-) False XLOC_006628
TCONS_00012792 mRNA downstream 12065 25071834 ~ 25198093 (-) False XLOC_006628
TCONS_00012788 mRNA downstream 12133 24918096 ~ 25198025 (-) False XLOC_006628
TCONS_00012790 mRNA downstream 13400 24920028 ~ 25196758 (-) False XLOC_006628
TCONS_00012786 mRNA downstream 303851 24881272 ~ 24906307 (-) False XLOC_006627
TCONS_00012797 mRNA upstream 82803 25297257 ~ 25305179 (-) False XLOC_006630
TCONS_00012798 mRNA upstream 83914 25298368 ~ 25303303 (-) True XLOC_006630
TCONS_00012799 mRNA upstream 188959 25403413 ~ 25408387 (-) True XLOC_006631
TCONS_00012800 mRNA upstream 257551 25472005 ~ 25484752 (-) False XLOC_006632
TCONS_00012802 mRNA upstream 258769 25473223 ~ 25484659 (-) False XLOC_006632
TCONS_00012791 other downstream 10933 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 12095 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012759 other downstream 923768 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 1082979 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 1248752 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012805 other upstream 316080 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 331222 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1352612 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 2436725 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 2475706 27690160 ~ 27690276 (-) True XLOC_006654

Expression Profile

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