Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012794 |
| length | 4069 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 22 |
| gene id | XLOC_006629 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 25210158 ~ 25284716 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042692 | muscle cell differentiation | biological_process |
| GO:0090257 | regulation of muscle system process | biological_process |
| GO:0050879 | multicellular organismal movement | biological_process |
| GO:0050881 | musculoskeletal movement | biological_process |
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0034446 | substrate adhesion-dependent cell spreading | biological_process |
| GO:0007517 | muscle organ development | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0006936 | muscle contraction | biological_process |
| GO:0006937 | regulation of muscle contraction | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0006941 | striated muscle contraction | biological_process |
| GO:0006942 | regulation of striated muscle contraction | biological_process |
| GO:0010927 | cellular component assembly involved in morphogenesis | biological_process |
| GO:0055001 | muscle cell development | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0031032 | actomyosin structure organization | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0055074 | calcium ion homeostasis | biological_process |
| GO:0048869 | cellular developmental process | biological_process |
| GO:0008015 | blood circulation | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0003009 | skeletal muscle contraction | biological_process |
| GO:0003012 | muscle system process | biological_process |
| GO:0003013 | circulatory system process | biological_process |
| GO:0003015 | heart process | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0060537 | muscle tissue development | biological_process |
| GO:0060538 | skeletal muscle organ development | biological_process |
| GO:0014706 | striated muscle tissue development | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0042383 | sarcolemma | cellular_component |
| GO:0099080 | supramolecular complex | cellular_component |
| GO:0099081 | supramolecular polymer | cellular_component |
| GO:0043292 | contractile fiber | cellular_component |
| GO:0045121 | membrane raft | cellular_component |
| GO:0098857 | membrane microdomain | cellular_component |
| GO:0098590 | plasma membrane region | cellular_component |
| GO:0044449 | obsolete contractile fiber part | cellular_component |
| GO:0036379 | myofilament | cellular_component |
| GO:0005865 | striated muscle thin filament | cellular_component |
| GO:0016528 | sarcoplasm | cellular_component |
| GO:0016529 | sarcoplasmic reticulum | cellular_component |
| GO:0005901 | caveola | cellular_component |
| GO:0099512 | supramolecular fiber | cellular_component |
| GO:0044853 | plasma membrane raft | cellular_component |
| GO:0031672 | A band | cellular_component |
| GO:0030016 | myofibril | cellular_component |
| GO:0030017 | sarcomere | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-050506-61 | Predicted to enable actin filament binding activity and structural molecule activity. Acts upstream of or within several processes, including atrioventricular valve morphogenesis; membrane repolarization during cardiac muscle cell action potential; and sarcomere organization. Located in adherens junction. Is expressed in several structures, including heart; lens; pectoral fin; solid lens vesicle; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; dilated cardiomyopathy 1W; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 15. Orthologous to human VCL (vinculin). |
| ensembl_id | ENSDART00000124167 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00012780 | lncRNA | downstream | 420674 | 24786959 ~ 24791265 (-) | False | XLOC_006624 |
| TCONS_00013788 | lncRNA | downstream | 588714 | 24590420 ~ 24623225 (-) | True | XLOC_006619 |
| TCONS_00012771 | lncRNA | downstream | 605312 | 24602410 ~ 24606627 (-) | False | XLOC_006620 |
| TCONS_00013789 | lncRNA | downstream | 605312 | 24604380 ~ 24606627 (-) | True | XLOC_006620 |
| TCONS_00012770 | lncRNA | downstream | 623719 | 24585224 ~ 24588220 (-) | True | XLOC_006618 |
| TCONS_00012801 | lncRNA | upstream | 188827 | 25473206 ~ 25477370 (-) | False | XLOC_006632 |
| TCONS_00012804 | lncRNA | upstream | 194267 | 25478646 ~ 25484733 (-) | True | XLOC_006632 |
| TCONS_00012809 | lncRNA | upstream | 250834 | 25535213 ~ 25540686 (-) | False | XLOC_006634 |
| TCONS_00012811 | lncRNA | upstream | 262506 | 25546885 ~ 25548821 (-) | True | XLOC_006634 |
| TCONS_00012823 | lncRNA | upstream | 485000 | 25769379 ~ 25773925 (-) | True | XLOC_006639 |
| TCONS_00012789 | mRNA | downstream | 12679 | 24918594 ~ 25199260 (-) | False | XLOC_006628 |
| TCONS_00012792 | mRNA | downstream | 13846 | 25071834 ~ 25198093 (-) | False | XLOC_006628 |
| TCONS_00012788 | mRNA | downstream | 13914 | 24918096 ~ 25198025 (-) | False | XLOC_006628 |
| TCONS_00012790 | mRNA | downstream | 15181 | 24920028 ~ 25196758 (-) | False | XLOC_006628 |
| TCONS_00012786 | mRNA | downstream | 305632 | 24881272 ~ 24906307 (-) | False | XLOC_006627 |
| TCONS_00012797 | mRNA | upstream | 12878 | 25297257 ~ 25305179 (-) | False | XLOC_006630 |
| TCONS_00012798 | mRNA | upstream | 13989 | 25298368 ~ 25303303 (-) | True | XLOC_006630 |
| TCONS_00012799 | mRNA | upstream | 119034 | 25403413 ~ 25408387 (-) | True | XLOC_006631 |
| TCONS_00012800 | mRNA | upstream | 187626 | 25472005 ~ 25484752 (-) | False | XLOC_006632 |
| TCONS_00012802 | mRNA | upstream | 188844 | 25473223 ~ 25484659 (-) | False | XLOC_006632 |
| TCONS_00012791 | other | downstream | 12714 | 25058733 ~ 25199225 (-) | False | XLOC_006628 |
| TCONS_00012793 | other | downstream | 13876 | 25191576 ~ 25198063 (-) | True | XLOC_006628 |
| TCONS_00012759 | other | downstream | 925549 | 24283670 ~ 24286390 (-) | True | XLOC_006607 |
| TCONS_00012755 | other | downstream | 1084760 | 24127063 ~ 24127179 (-) | True | XLOC_006605 |
| TCONS_00012752 | other | downstream | 1250533 | 23961292 ~ 23961406 (-) | True | XLOC_006602 |
| TCONS_00012805 | other | upstream | 246155 | 25530534 ~ 25530648 (-) | True | XLOC_006633 |
| TCONS_00012810 | other | upstream | 261297 | 25545676 ~ 25548614 (-) | False | XLOC_006634 |
| TCONS_00012832 | other | upstream | 1282687 | 26567066 ~ 26567184 (-) | True | XLOC_006646 |
| TCONS_00012849 | other | upstream | 2366800 | 27651179 ~ 27663072 (-) | False | XLOC_006653 |
| TCONS_00012853 | other | upstream | 2405781 | 27690160 ~ 27690276 (-) | True | XLOC_006654 |
