RNA id: CI01000000_16835058_16848950.mRNA



Basic Information


Item Value
RNA id CI01000000_16835058_16848950.mRNA
length 844
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000000_16835058_16848950
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16834920 ~ 16849092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAATAAAAACACTGGATAAAAGATGGAATACAGAACAAAAGATGATTATTTTCCTTGTAAACATTTTAAGAGTGAGTAATTCATATGTTGAAATTGTTACAAATGCAAAACAAACATTTGTGTTGTTGATTTTGAGTAATGAATGCTAAGAATAAGCCGTCACCTGAGACGATACAGGCAGGTAAACACCATCTGCTATCTTGCAAGGCTTTCCTCACTAGTCTAGCTATTTCCATTATTCATGCGCTAGTCACCGGTTCTTACCTGTCCTCCTCCACACCATATCTGTTTCTTATTTCTTTCAGAAAACAATCAGGTCATGGTCCTGATCTGGTGCCACTCAACTCCACAATAATCAGGTCTTATATCTGTGAGCGTGTGTTTGAAAAGCCTCAGACAGTTCTGGGAAGACAAACACACACATATACGTGCCGGCTGAGGAAATGGCATGATCCTTTGTGGATTGACATTGCCATCTGGCTGACACTGAAGAAGAAAAGGAGGTTCACGGCTTGTGTGGCTACAGACACAGAAAAGGAGCAATCGCAGGGCAATGTTTCCTGTTTCAGTAATTTAACAAAACAAGAGACGTCTGTCTATCTAGATGCACAAATGTATTCAGTTCTTCACAATGGAAACCACATTGAACAAGAGAAACTGTCAATACAGAATGACACAGAGTCCCAGGAGTCATGTTTCTGACACAGGTCACCCTCTAATGAGGACCATCACTGGAAGGTGCCATTTCTTACCGCCCTGCCTGCAGCTCAGAACCGACCGGAGCATTTCAGGACTCGAGTACTGGGAGCTGGACTGAACTGTTTGCTCAAAGAGCTGCTGAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12096 lncRNA upstream 97673 16737032 ~ 16737247 (+) True G10968
TU12084 lncRNA upstream 143370 16691262 ~ 16691550 (+) True G10956
TU12023 lncRNA upstream 207612 16626953 ~ 16627308 (+) True G10912
TU12022 lncRNA upstream 208428 16626008 ~ 16626492 (+) True G10911
TU12014 lncRNA upstream 250802 16581312 ~ 16584118 (+) True G10903
TU12062 lncRNA downstream 52838 16901930 ~ 16902606 (+) True G10937
TU12059 lncRNA downstream 72200 16921292 ~ 16921561 (+) True G10934
TU12147 lncRNA downstream 147547 16996639 ~ 16996931 (+) True G11019
TU12156 lncRNA downstream 155310 17004402 ~ 17004656 (+) True G11028
TU12167 lncRNA downstream 166248 17015340 ~ 17015573 (+) True G11039
CI01000000_16781396_16802242.mRNA mRNA upstream 32502 16781396 ~ 16802418 (+) True CI01000000_16781396_16802242
CI01000000_16676128_16679215.mRNA mRNA upstream 155680 16676036 ~ 16679240 (+) True CI01000000_16676128_16679215
CI01000000_16611284_16612778.mRNA mRNA upstream 221035 16611284 ~ 16613885 (+) True CI01000000_16611284_16612778
CI01000000_16573665_16580545.mRNA mRNA upstream 253962 16573665 ~ 16580958 (+) True CI01000000_16573665_16580545
CI01000000_16468276_16479177.mRNA mRNA upstream 353861 16467489 ~ 16481059 (+) True CI01000000_16468276_16479177
CI01000000_16861880_16863508.mRNA mRNA downstream 11351 16860443 ~ 16863777 (+) True CI01000000_16861880_16863508
CI01000000_16871696_16877904.mRNA mRNA downstream 22604 16871696 ~ 16878004 (+) True CI01000000_16871696_16877904
CI01000000_16878307_16893681.mRNA mRNA downstream 29119 16878211 ~ 16894061 (+) True CI01000000_16878307_16893681
CI01000000_16894331_16900440.mRNA mRNA downstream 45143 16894235 ~ 16900443 (+) True CI01000000_16894331_16900440
CI01000000_16903722_16914680.mRNA mRNA downstream 54630 16903722 ~ 16915079 (+) True CI01000000_16903722_16914680
TU11228 other upstream 904358 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 2599979 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4655912 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4697912 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 5589287 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 490062 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 490062 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1034861 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1183647 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 1831775 18680867 ~ 18710278 (+) False G11801

Expression Profile