RNA id: CI01000000_18665046_18710097.mRNA



Basic Information


Item Value
RNA id CI01000000_18665046_18710097.mRNA
length 4585
RNA type mRNA
GC content 0.50
exon number 24
gene id CI01000000_18665046_18710097
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 18664585 ~ 18710111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGGCTGAGACATCATGACCTGGACAAACCCTCTGACCCTTCTTCGGCAGGGCTGGGCGAGGCACAGGGACCGGGACAAACCCGTCAGGACGGTGGTCTCCAACCTGCCCTTTGAAGATCTAAAGAAACGTGACCAGCCGAACCGCCAGTATGAGGGCAACGCGATTAAAACCAACAAATACAGACTTTGGTCTTTCATCCCCATGAACTTATTTGAGCAGTTCCACCGTTTGGCCAACATTTATTTTGTGGGCCTGGCCATCTTGAATTTCGTCCCAGTGGTCAACGCGTTCCAACCGGAGGTGGCTCTCATTCCCATTTGTGTCATCCTGGCACTGACCGCTGTCAAGGATGGCTGGGAGGATTTCCGGAGGTACCAGAGTGACCAGCAGCTCAACAATATGCCTTGCTTCATATTCAGCAGAACTGAAGCCTTTCGGTCTTTGATACCTCAAAACTTTTTGAGCTGTCGTGGGAAGAAGAGCCTTTGGCTCCTGGACATATGTGTGGAGAGGAGAGGGGCAGTTGGTGTGGAGGAGGGATGCAGGAAGAATTGTCAGGAGTGTGGCAGGAAACAGATGTGCTTCGTGGAGAGGAGGTGGAAGGATGTACGGGTGGGGGATTTTGTGAGAGTGCTCTCTAACGAGATCATCCCAGCTGACATCCTGCTCCTGCACACGTCCGACCCTAATGGAGTGTGCCACATGGAAACAGCCAATCTGGATGGAGAGACCAACCTCAAACAGAGGAGGGTGGTGCCAGGCTTTTCTACTCTCGGTGAACCATTTCAACCTCAAACATTTGACAGTACTGTAGTGTGTGAAAACCCCAACAACAACCTCAACCTGTTCAAAGGTTATGTGGAGAGGCCTGATAAGAGGAGAACAGGCTTCGGCATCGATAGTCTTCTGCTGCGCGGGTGCACAGTGAGAAATACTGATGACGCGGCTGGAATAGTGGTGTACGCAGGACAGGAGACCAAATCCATGTTAAACAACAGCGGGCCCAGGTACAAACGCAGCAAGATTGAGAGGAAGATGAATACGGATGTTCTCTTCTGCGTGGTTCTTCTATTTTTCATGTGTCTCATCGGAGCCCTGGGCCATTCTATCTGGTTGGAAACTTTTACCACTATGCCCTCATACATCGTCCCTGACAGTAATGGAAATTACACCCCTTCAGTGTTAGCAGGATTTTACATGTTCTTCACAATGATCATCTTACTACAGGTGATGATTCCTGTGTCACTGTATGTGTCCATTGAGCTGGTGAAGATGGGGCAGATCTACTTCATCACTCAGGACGTGGAGCTTTACGATGAGGAGCTGGACAGTCGGGTCCAGTGTCGTGCTCTGAACATCACAGAGGACTTGGGACAAATCCAGTACGTCTTCTCAGATAAGACAGGGACGCTTACAGAAAACAAGATGGTATTCAAGCGCTGCACCATCATGGGGACTGAATACTGTCATGATGAGAACGCTGCTCGCTTGGCGGTTGTCAATGGAGCAAATGAGGAGGAGGTCACTATCTTCCAACAGACAAAGCTTCCTCCTCTCTTCCCTCTGGAAGAAATACAGGACTGCCACACGGGAGACAGAAATCACGCCAACACTCAAGTCACAGCTGCCAATCGACGCAGATCAAAAGTGGCGGCGGGAGCCCAAAGTGACATGGCCTTCAGCAGTCCTCTGATGGCCGAGCAGTTTGGTGTCAGTTATGAGCACAGCAATGCTGGCTCTGATCCGCTATGTTTCGATCCGTTGACATATGGGGCTGCTGGGGAAACAGTGGTGGTTCCAGACAAGAAGCTGATGCTGGAGGTGGACCGTGAGATGGCGAGCATCCAGAAGGGGCCCTACCTGGACTTCTTCCTGGCTTTGGCCATCTGCAACACAGTGGTGGTTTCTACAGTGACGGCCCAGAGACAGAGGGTCAAAGGACACCGTACCTCTGCATACTCAGGTGGTTCATTTCATAACATGGGACAGTGGTTCAGAAAGGGTTCCCTGCGGAAAGTCTTCAGCTCCATGAGATTCTTCAGGAGAGGCGAGGACACACTCGCAGATCCTTTCGCCAAAGATGAAGACGAGTCTGACATGTTTCACAGCTCAGACATCTCCGACTCAACTACAGGGCAGAAGGTCATTTCAAGTGAAAGCGAGTTTAAACGCAGGTCGGAGGAGGTGTGTTTTGAAGCCCACAGCCCAGATGAGGCCGCTCTGATACATGCAGCAAAGGCTTATGGGTTCACCATGGTGGAACGCACTCCTCATTACGTCACTGTCAAGCTGCCTGATGATTCGCTGCTGAAGTTTGAGGTGCTGGACGTCCTGACCTTCGACTCGACACGGAGGAGGATGTCCATAATAGTACGACACCCACACACCAATCAAATCATCATGTATACTAAAGGAGCTGATTCAGCCATCATGGAGAGACTGGGGAATGTGTTTTCAGATATGTCACAGGTGGGTAGTGTGGAGAAGCAAATTGCTGTAAGAACTCAAAAAGACCTCGACATGTACGCCAGGGATGGATTACGAACTCTGTGCTTTGCCAAAAAGGTTATCAGTGAAAAGGATTTCAAGGCCTGGTTTGCTATCAGACAGGAGGCGCTGGCAGCCATCGATGAGAAAGAAGAGCGTCTTATGGACACTGCAACCTACATCGAGAACAACTTCACTCTGCTGGGGGCCACTGGCATTGAGGACCGTCTCCAAGAAAATGTCCCAGAAACCATCCAGGCTCTGAGACGGGCTGGCATGCAGGTGTGGGTGCTGACAGGGGACAAACCCGAGACGGCCATCAACATCGCATACTCCTGCAAGCTGCTAGACCATGAAGACCTGGTGTTCATCTTCAGCACAAACAAGAAGTCTGTGTGTAAAATGAGGATAGAAGACACACTGGGAGAGGTGCGACGGAGTTCCCACTCACTTCAGCTGGTGATCGATGGGCCGACTCTGAGCATGGCCATGTCAGACGACCTGGTGGAGCAGTTTGTGGAGCTTTGCAAACACTGTTGTGCAGTGCTTTGCTGTAGAGTGACGCCGCTGCAGAAGAGCAGTGTGGTTAAACTCATACGGCAGAAACTGAGGGTCATGACCCTCGCTGTAGGTGACGGCGCCAATGATGTGAACATGATTCAAGCTGCAGACGTTGGCATTGGCGTTTCTGGACAGGAGGGAATGCAGGCCGTCATGGCCAGTGATTTTGCCATCACACGCTTTAAACACCTGCAAAGACTGTTGCTGGTTCACGGACACTGGTGCTACTCAAGACTGGCCAACATGGTCATCTATTTCTTCTACAAGAATGTGGCGTATGTGAATCTGCTGTTCTGGTATCAGTTCTTCTGTGGCTTCTCTGCCACCGCCATGATCGACTACTGGCTCATGATATTTTTCAACCTGTTCTTCACCTCGGCTCCTCCCATCATGTTTGGGATAATGGACAAAGAGGTGTCAGACTCCACTTTACTGAGCCTGCCTGAGCTCTATAAGAGAGGACAGCACTCGGAGGGCTACAGACGTTCAACGTTTTGGATTGCAGTTCTAGATGCTTTCTATCAGAGTCTAGTGTGCTTCTTTATTCCATACTGGAGTAATGTGTTATCTAATCACTGCTTGTACTTTCTCAAGACATACAACGGTTCAGACATCGGCATATTCTCGTTCGGCACTCCCATGAACACGGTCTCTCTGTTCACCATCATCCTGCATCTGGCCATTGAGATCAAGAGCTGGACGCCGGTGCATTGGGTGATCATGGTCGGCAGTGTGCTGGTGTACTTCATCGTGACTCTGGCCTACAGCGCCATCTGTATCAGCTGCAACCATCCCTCCGACCCCTACTGGATCATGCACAAACAAATGGCCGATCCCATGTTTTACCTCGTCTGCATTTTAACAACTGTTGTTGCTTTATTGCCAAGGTACACCTTGCATGTCCTAAGGGGAACGCTGGCACCCTCCCCTCACCTCCGCGCGCGGCAGCTAGAGCGGCTCCCCCCCTCCCATCGGGAGCAGCGGATCAGAGAGTGGCGTGGTCTCCGAGACACGTGTATTCCTCCTTCTCTCAGATCCCAGGAACACAGCTCCTCTGCCTGCCCGAGTGCATAAAGTACACACCACAGTCCGGCACATGTACAGAGAACGACAATGCCGCAAAGCTTGAATTTTTCAAACCCGTTATTTATATTTTGCACACACGGATGCGCATGCACTCCAAGGAATGAAGCTGTGCTTTTCTATTTTGAATGTGCTCTTTTGCTCCCACAAACCATTTGCATGAACTTCACATGTTTCTGCGCGGCTCAGTTCACACTTGATCAATACATGCGTGGCGTGAATGAATGTAATCTGTTGGGTGGATGATGCAGCTGAGCCTTTTCTCTTCCTGTTGTCATGTGGACCACATTTGTATGCATTTGCGCTTTGAGCTGCTCATGCAATAATTGAGGTTTGCAGATGTTACATAATATCTTGGTTCATATATTCAGAGCTTGTTGTGCATGCTGAGAGAAATACAAGCACCACAGTGCGATTGAGGAGGCTGGATCTTCTTCTTAATTCCTAATAAA

Function


GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13694 lncRNA downstream 104510 18559822 ~ 18560075 (-) True G12378
TU13642 lncRNA downstream 217012 18440497 ~ 18447573 (-) True G12329
TU13493 lncRNA downstream 386061 18018668 ~ 18278524 (-) True G12190
TU13496 lncRNA downstream 405543 18199891 ~ 18205147 (-) True G12193
TU13495 lncRNA downstream 616028 17998935 ~ 18048557 (-) True G12192
TU13590 lncRNA upstream 73144 18785488 ~ 18788006 (-) True G12279
TU13724 lncRNA upstream 97713 18807824 ~ 18811485 (-) True G12397
TU13736 lncRNA upstream 132711 18842822 ~ 18843057 (-) True G12406
TU13744 lncRNA upstream 154220 18864331 ~ 18864858 (-) True G12414
TU13746 lncRNA upstream 157740 18867851 ~ 18895992 (-) True G12415
CI01000000_18618397_18645425.mRNA mRNA downstream 19160 18617318 ~ 18645425 (-) True CI01000000_18618397_18645425
CI01000000_18613274_18614596.mRNA mRNA downstream 49842 18611820 ~ 18614743 (-) True CI01000000_18613274_18614596
CI01000000_18605257_18608772.mRNA mRNA downstream 55498 18604535 ~ 18609087 (-) True CI01000000_18605257_18608772
CI01000000_18599527_18602359.mRNA mRNA downstream 62118 18599102 ~ 18602467 (-) True CI01000000_18599527_18602359
CI01000000_18574740_18584010.mRNA mRNA downstream 80519 18573831 ~ 18584066 (-) True CI01000000_18574740_18584010
CI01000000_18721338_18772372.mRNA mRNA upstream 11164 18721275 ~ 18772672 (-) True CI01000000_18721338_18772372
CI01000000_18779242_18784513.mRNA mRNA upstream 68849 18778960 ~ 18784513 (-) False CI01000000_18779242_18784513
CI01000000_18789985_18793339.mRNA mRNA upstream 79874 18789985 ~ 18793339 (-) True CI01000000_18789985_18793339
CI01000000_18815522_18834911.mRNA mRNA upstream 105362 18815473 ~ 18834911 (-) True CI01000000_18815522_18834911
CI01000000_18948340_18951635.mRNA mRNA upstream 238016 18948127 ~ 18951954 (-) True CI01000000_18948340_18951635
TU12242 other downstream 1996638 16667118 ~ 16667947 (-) True G11107
TU11724 other downstream 2300038 16362508 ~ 16364547 (-) False G10645
TU11754 other downstream 2433459 16226287 ~ 16231126 (-) True G10672
TU10602 other downstream 4165991 14483120 ~ 14498594 (-) True G9601
TU10603 other downstream 4318051 14341002 ~ 14346534 (-) True G9602

Expression Profile