RNA id: TCONS_00012804


Basic Information

Item Value
RNA id TCONS_00012804
length 807
lncRNA type retained_intron
GC content 0.38
exon number 5
gene id XLOC_006632
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25472005 ~ 25484752 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCTACTCAAGATTGAAAGTAACACCAGTCCTGTATTGTTCGTCCTAAAAATAAACCCCTTCTGAGAAACTGAAAACAGGTTTTGTTAGCACTCCTTCCGGCATCCAATAATGGAAGACGAGAGCCACCCAAAAACCCTCTATGTGGGGAATCTTTCAAGAGATGTAACGGAGAACTTGATCCTACAGTTATTTACTCAGATTGGGCCATGTAAAAGTTGTAAAATGATAACAGAGCAGTCTGATAGCAGCAGGAAGATGAACTCTTCTTCTATTGGATTTTCTGTTTTGCAGCATACAAGCAATGACCCGTATTGCTTTGTGGAGTTCTTTGAACATAGAGACGCTGCTGCGGCATTAGCTGCCATGAACGGAAGGAAGATTTTGGGAAAGgAAGTCAAGGTAAACTGGGCTACCACTCCGAGCAGTCAGAAGAAAGATACATCAAatcattttcatgtttttgtggGAGACTTGAGCCCTGAGATCACAACTGATGACATCAGAGCTGCATTTGCCCCCTTTGGGAAAATCTCGTAAGTTTTAAGAGGTCACACCCTTCTTGTCTGCATAATGTAGAGTGGTGTGTGTTTACACTAAGCCAGATGACctttatatgtaattttttaaCCTTTGCATTCTTTAAACATTTCTGTCAGTAATGAAAGCTTTTTTCTCCTTTATATTAAACATCAATGTTTATAGTTTTAAACTTACAGATTTGAATTGAGAACAGGATGTCATATAGTTTTAGAAACCGtatatttttaatttgcattGGTGATTTTAATGGTCAGTGTCATGAG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-1547 Predicted to enable DNA binding activity and RNA binding activity. Orthologous to human TIAL1 (TIA1 cytotoxic granule associated RNA binding protein like 1).

Ensembl:

ensembl_id ENSDART00000147774

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012801 lncRNA downstream 1276 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012796 lncRNA downstream 256152 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00013790 lncRNA downstream 264192 25210158 ~ 25214454 (-) False XLOC_006629
TCONS_00012780 lncRNA downstream 687381 24786959 ~ 24791265 (-) False XLOC_006624
TCONS_00012771 lncRNA downstream 872019 24602410 ~ 24606627 (-) False XLOC_006620
TCONS_00012809 lncRNA upstream 50480 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012811 lncRNA upstream 62152 25546885 ~ 25548821 (-) True XLOC_006634
TCONS_00012823 lncRNA upstream 284646 25769379 ~ 25773925 (-) True XLOC_006639
TCONS_00013791 lncRNA upstream 291656 25776389 ~ 25778815 (-) True XLOC_006640
TCONS_00012826 lncRNA upstream 340594 25825327 ~ 25827135 (-) True XLOC_006642
TCONS_00012803 mRNA downstream 1726 25474029 ~ 25476920 (-) False XLOC_006632
TCONS_00012799 mRNA downstream 70259 25403413 ~ 25408387 (-) True XLOC_006631
TCONS_00012797 mRNA downstream 173467 25297257 ~ 25305179 (-) False XLOC_006630
TCONS_00012798 mRNA downstream 175343 25298368 ~ 25303303 (-) True XLOC_006630
TCONS_00012795 mRNA downstream 193930 25212394 ~ 25284716 (-) False XLOC_006629
TCONS_00012806 mRNA upstream 46271 25531004 ~ 25548733 (-) False XLOC_006634
TCONS_00012807 mRNA upstream 50251 25534984 ~ 25548882 (-) False XLOC_006634
TCONS_00012808 mRNA upstream 50310 25535043 ~ 25548882 (-) False XLOC_006634
TCONS_00012812 mRNA upstream 85098 25569831 ~ 25581303 (-) True XLOC_006635
TCONS_00012814 mRNA upstream 99823 25584556 ~ 25632756 (-) False XLOC_006636
TCONS_00012791 other downstream 279421 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 280583 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012759 other downstream 1192256 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 1351467 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 1517240 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012805 other upstream 45801 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 60943 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1082333 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 2166446 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 2205427 27690160 ~ 27690276 (-) True XLOC_006654

Expression Profile

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