RNA id: TU21


Basic Information

Item Value
RNA id TU21
length 597
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G18
representative False

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 25075 ~ 25671 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAACAAACACCCCTCTCTTCATTGCTCCGCCTCCAAAACTCACACTCCAATCCTAACCACCCTGCTGCGAGTCGGTAGTTTACCTGCAAAACTCTCACTATCTAGCTACTGTTACATGTGTAATGAGAGTGGATCTCTGTTTATCACAGCTGATGCGAAACAAAATGCTTCACCAAAAATAAAGCGCAGTTGATGAACGAACGACAAGGAAGCACAAAAAATGAACATACAGTACACAAGAGTAAATACAAACAATAGTTTCTTGTTAATCACAAACAATTTTGCTTAAACCATCAAAATATGAGGAAAATATTTTTTTATTTTTATATTATTTAAATGTTTTAAAATATGACATTGACTACAACGTAATCAATTTTTAATATTTAATTCAAATATTTAAAAAAATGTGTTAAAAGATATAAGCATATTGTGTAGCTGTGCTTGGAGTCAATTGTTTCATGTGTGATAATGAAATGAAATTTCAAATTATTTCAAATTATTTTTGGCCAGGCTGTCATACAAATAAATTATGAACGCATGCAAAAACAAGAGAGAACCAATTAAGGTTGAAGATGTCAGTTTTTGTATGGCTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16 lncRNA upstream 500 24122 ~ 24575 (+) True G14
TU15 lncRNA upstream 1691 22563 ~ 23384 (+) True G13
TU18 lncRNA upstream 2995 21713 ~ 22080 (+) True G16
TU12 lncRNA upstream 6855 17172 ~ 18220 (+) True G10
TU27 lncRNA downstream 421 26092 ~ 26365 (+) True G20
TU26 lncRNA downstream 1021 26692 ~ 26989 (+) False G19
TU24 lncRNA downstream 1069 26740 ~ 27356 (+) False G19
TU22 lncRNA downstream 1398 27069 ~ 27356 (+) False G19
TU25 lncRNA downstream 1398 27069 ~ 27634 (+) True G19
CI01000000_00050357_00064104.mRNA mRNA downstream 24326 49997 ~ 64310 (+) False CI01000000_00050357_00064104
CI01000000_00084533_00088200.mRNA mRNA downstream 58615 84286 ~ 89204 (+) True CI01000000_00084533_00088200
CI01000000_00108218_00111090.mRNA mRNA downstream 82291 107962 ~ 111210 (+) True CI01000000_00108218_00111090
CI01000000_00112199_00115163.mRNA mRNA downstream 85858 111529 ~ 115356 (+) True CI01000000_00112199_00115163
CI01000000_00119500_00121099.mRNA mRNA downstream 92878 118549 ~ 121314 (+) True CI01000000_00119500_00121099
TU325 other downstream 477538 503209 ~ 507072 (+) True G252
TU431 other downstream 646171 671842 ~ 676937 (+) True G350
TU531 other downstream 1399450 1425121 ~ 1432854 (+) True G435
TU678 other downstream 1789782 1815453 ~ 1908808 (+) False G579
TU3086 other downstream 4428107 4453778 ~ 4454232 (+) True G2774

Expression Profile