RNA id: TU98


Basic Information

Item Value
RNA id TU98
length 264
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G74
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 144840 ~ 145103 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAAAGTTGAACTTTGATTTTTTTGTTGCTATAACAGGGTCATTTAGAAAGTGGACGTGGCTAAATATACCCAAAAGCCTATAAAACCTAAACAAAAGCTCAGAACTTCACAAAAATAGGTGAGCACATGCAGCATGTGACTCTAAAGAAGCAGGCCAATTTTTATGGAGATCGGACCATAGATGGCACTATAACTGTTAAAAACCTTTGAAAAACATATGTTTTTAATGGTTTTAGCTGAAAATGTATATGACTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97 lncRNA upstream 228 144396 ~ 144612 (+) True G73
TU96 lncRNA upstream 690 143869 ~ 144150 (+) True G72
TU17 lncRNA upstream 81652 60756 ~ 63188 (+) True CI01000000_00050357_00064104
TU25 lncRNA upstream 117206 27069 ~ 27634 (+) True G19
TU24 lncRNA upstream 117484 26740 ~ 27356 (+) False G19
TU105 lncRNA downstream 5613 150716 ~ 151207 (+) True G81
TU111 lncRNA downstream 20049 165152 ~ 165353 (+) True G87
TU116 lncRNA downstream 27694 172797 ~ 244452 (+) True G92
TU232 lncRNA downstream 183369 328472 ~ 328984 (+) False G181
TU230 lncRNA downstream 183533 328636 ~ 328984 (+) False G181
CI01000000_00127682_00128077.mRNA mRNA upstream 16763 123554 ~ 128077 (+) True CI01000000_00127682_00128077
CI01000000_00121669_00123027.mRNA mRNA upstream 21661 121591 ~ 123179 (+) True CI01000000_00121669_00123027
CI01000000_00119500_00121099.mRNA mRNA upstream 23526 118549 ~ 121314 (+) True CI01000000_00119500_00121099
CI01000000_00112199_00115163.mRNA mRNA upstream 29484 111529 ~ 115356 (+) True CI01000000_00112199_00115163
CI01000000_00108218_00111090.mRNA mRNA upstream 33630 107962 ~ 111210 (+) True CI01000000_00108218_00111090
CI01000000_00252240_00259416.mRNA mRNA downstream 107137 252240 ~ 259848 (+) True CI01000000_00252240_00259416
CI01000000_00260299_00262433.mRNA mRNA downstream 115196 260299 ~ 263524 (+) True CI01000000_00260299_00262433
CI01000000_00264365_00265448.mRNA mRNA downstream 119262 264365 ~ 265506 (+) True CI01000000_00264365_00265448
CI01000000_00588173_00605818.mRNA mRNA downstream 442765 587868 ~ 606196 (+) True CI01000000_00588173_00605818
CI01000000_00639336_00658655.mRNA mRNA downstream 494049 639152 ~ 659048 (+) False CI01000000_00639336_00658655
TU325 other downstream 358106 503209 ~ 507072 (+) True G252
TU431 other downstream 526739 671842 ~ 676937 (+) True G350
TU531 other downstream 1280018 1425121 ~ 1432854 (+) True G435
TU678 other downstream 1670350 1815453 ~ 1908808 (+) False G579
TU3086 other downstream 4308675 4453778 ~ 4454232 (+) True G2774

Expression Profile