RNA id: TCONS_00012807


Basic Information

Item Value
RNA id TCONS_00012807
length 2408
RNA type mRNA
GC content 0.46
exon number 16
gene id XLOC_006634
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25531004 ~ 25548882 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATGCAGGCACGTTGGTCACGTGTTAGTTTCATGACGCAATTTTCCCGCCACGGTGTATTGTGCCGTGCTAAACTCTGAAACGTGTTTACTGTAGTACACGTCAAAGGAGTATTACTTTTAACTTTGGTCTGTTTCTGAATCCTGCAGCGATGCCCACTACTCATGACTGGATCAATAACCCGCTGGGTGTTGTTGACGGGCTGTTTGCCCAGAGTAACTCCAGTCCAGACTGGGAGAAGAAAGTTGTGGAGTATTTCAAAGAGAAACTGAAACTAAACGACGCTCATACATGGGTTCCTTCTCTGAATGATGTTCCTCTGCACTACCTAAAGCCCAACAGCCTTGTAAAATTTCGTTGCATGGTCCAGGATATGTTTGATCCAGAGTTTTTCATGGGTGTTTATGAGATGAACGATCCCACATCAAACTCTAAACAGGTGAAATGTGGAAAATACAAAGATGTCACAGAGTGCGGGCAGGTGGACTTTAACTCAAGAAACACAGTGACTTCAGAGAGACAGACGTTTTACTGTGTCCCGATCCCAGGAGAATCCAATTGGGTCAAGGAAAGCTATGCAGGCACTAGTCAGGCACGAGTGGTGCCCTCCACTTCCTACGTCCCCAACAGGCATAAGCGCAGCTATGAAGAAGACGATGAGATGGACACGCAGTGCCAACAGACCAAAGATATCAGCCAAGGAGCTCAAAGCTCTTCTGAGTCTCACGGCAACACTGAGCCGAAGCGTCAAGAGACCGAAGCCCCCAGTCAGGACTCGTCTTCATCACACTGCACATCCAGCCTGGATCTCAACTTCCCTTTGCCTGGTGAAAAGGGCCCAGCCTGTCTTGTTAAGGTGTATGAGGACTGGGACAGTTTCAAGCTGAATGACATGTTGGAGGTATTTGGTATCCTCTCTGTGGACCCAGCCTTGAGCGTGATTGCAGATGAGAGAGAGGCATCTTCATTGCTGGACCCCACAGAAGGCATGGAGACTATGGAGGAACAGAGAGTTCACAGCCCACCAGCGTCACTTGTACCACGACTGCACATGCTGTATGCTCAACCTCTAGCGCACAACAACCCACTGCTGCCCTCTAGTCCACTGGAGAATAACGCAGACTATTTGAGTTGTGTTCTTGGCGAGCTGGCTTCAGTCCGAGCAGAGCTGCTCACATTCTTTACACATATCCTGATGGGAGATTCACTTGCTGCAGAGTTCCTCATTCTCCATCTCATCTCCAATGTatacagCAGACGGGATGTTCTTCCTTTGGGCAAATTCACATTGAATCTCAGTGGCTGTCCTCTCAGCTCTCCATTCACAGAGCATCTCTTCAAAGTCATCCAACAGCTTGTGCCATCTTCATACCGACTATCAATGAGCCTGCATAATATGAACACCCAGCGCATGGTGCCTCGGAAAGACTACACCGCTAACCGTCTAGTGAGCGGGACTCTTCAGCTGGCCAAAAACACATCATTGTTTCTGGATGAGACGCAGTTGGAGCAGGGCCAACTGGACTCCACAGGTGTGCGTAATATCACTGCGCTGGGGAACCTGATCTCCTGGCAGAAGGTTGATTACGACTTCAACTACCACCAGATGGAATTCCCTTGCAATATTAACGTGCTTATCGCGTCCGAGGGCCGATCGCTCCTCCCGTCTGACTGTCAGGTTCACTTGAGGGCCTCTCTGAATCCACCTAACCTGGAGGAGTATCTGAGCGCGGTGCAGGTGGCACAGGTTCCATCCCAGCTCAACAAGTACCGTGTTTACCTTAGTGTGGCGCGGGCTCTGAACTACACCATTTCAGATGAGATCACAAAGGCTGTGGAAGAGGACTTTGTAGATATGCGAAAAGATGATCCTCAGAGTATGTCAGCAGAAGACCTTCATAGACTGCTGGTTGTTGCAAGGTTGCTCTCATTGAGTCATGGACAGAACACACTTTCTAGAGACGGCTGGATGAAAGCCAAGCAGCTCGAGGCCTTGAGGATTAGTCGGACACAACAGCAGAAATGTGTGAACGGAAACGAGCCTTAAAATATATTGCTATTTACAACTACCTAAACAGATACCATACTTATTATTTTGGATTAAAAAGTAATGTTTTCATATGGCAAAAAAAACTCTTGTAAAGTTCgttttttttactacattttaaacCTTTGGGAAAACTTAGACACTGGTGAAGTCGATTTTTgcattatttagtttttcatactTGCCTTGTATATTAACATTTATACAAATATGTAGACATGTAACAATGTATAACTGCCTTACAGCAAATATGTACACTTCTGGCACAAGGGTATTAGGAAAataaagttttgaaaactttgcCTTTATAGTTTTACTGAAATGAGGTCAATGtgacattaataaatataacatcAGCCGA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0007062 sister chromatid cohesion biological_process
GO:0051301 cell division biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9676 Predicted to enable chromatin binding activity. Predicted to be involved in DNA-dependent DNA replication and sister chromatid cohesion. Predicted to act upstream of or within DNA replication and cell division. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and ventral mesoderm. Orthologous to human MCMBP (minichromosome maintenance complex binding protein).

Ensembl:

ensembl_id ENSDART00000135788

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012804 lncRNA downstream 50251 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012801 lncRNA downstream 57614 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012796 lncRNA downstream 312490 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00013790 lncRNA downstream 320530 25210158 ~ 25214454 (-) False XLOC_006629
TCONS_00012780 lncRNA downstream 743719 24786959 ~ 24791265 (-) False XLOC_006624
TCONS_00012823 lncRNA upstream 220497 25769379 ~ 25773925 (-) True XLOC_006639
TCONS_00013791 lncRNA upstream 227507 25776389 ~ 25778815 (-) True XLOC_006640
TCONS_00012826 lncRNA upstream 276445 25825327 ~ 25827135 (-) True XLOC_006642
TCONS_00013792 lncRNA upstream 297650 25846532 ~ 25852256 (-) False XLOC_006643
TCONS_00013793 lncRNA upstream 297650 25846532 ~ 25853311 (-) True XLOC_006643
TCONS_00012800 mRNA downstream 50232 25472005 ~ 25484752 (-) False XLOC_006632
TCONS_00012802 mRNA downstream 50325 25473223 ~ 25484659 (-) False XLOC_006632
TCONS_00012803 mRNA downstream 58064 25474029 ~ 25476920 (-) False XLOC_006632
TCONS_00012799 mRNA downstream 126597 25403413 ~ 25408387 (-) True XLOC_006631
TCONS_00012797 mRNA downstream 229805 25297257 ~ 25305179 (-) False XLOC_006630
TCONS_00012812 mRNA upstream 20949 25569831 ~ 25581303 (-) True XLOC_006635
TCONS_00012814 mRNA upstream 35674 25584556 ~ 25632756 (-) False XLOC_006636
TCONS_00012813 mRNA upstream 35674 25584556 ~ 25632756 (-) True XLOC_006636
TCONS_00012815 mRNA upstream 93168 25642050 ~ 25719628 (-) False XLOC_006637
TCONS_00012816 mRNA upstream 133793 25682675 ~ 25720876 (-) False XLOC_006637
TCONS_00012805 other downstream 4336 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 335759 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 336921 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012759 other downstream 1248594 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 1407805 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012832 other upstream 1018184 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 2102297 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 2141278 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 2630552 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 2728016 28276898 ~ 28295414 (-) False XLOC_006661

Expression Profile

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