RNA id: TCONS_00012814


Basic Information

Item Value
RNA id TCONS_00012814
length 5094
RNA type mRNA
GC content 0.44
exon number 19
gene id XLOC_006636
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25584556 ~ 25632756 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACTTTCGTGGCTCCTTTCGCTCGAATCAAAACAAGGCAAAGTTCTGTTGTCAGGAATCAAAATACTTTTACCTGTTCGTTGTGACATTACACTTATGATTGACAATTATGGGAAGTACGCGGGGAATCGTGTGGGGAGTGCTCCTGCTTCTCCTGTCTGAAGGTTCATTCGGGCTGTATTTTCCTCAAAGGCTTTACACAGAGAACATCTACGTGGGTCAGCAGCAGGGATCACCGTTGCTTCAGGTCATTTCAATGCGGGAATTCCCTACAGAGAGGCCTTATTTCTTCCTGTGCTCGCACAGAGACGCTTTTACATCATGGTTTCACATAGATGAGGCGTCCGGAGTTCTTTATCTCAACAAAACCCTGGAGTGGAGCGACTTCAGTAGTTTACGCAGCGGCTCAGTTCGCTCCCCGAAGGATCTCACCCTGAAGGTCGGAGTCTCTTCAACTCCCCCAATGAAAGTGATGTGCACCATCCTACCCACAGTGGAGGTCAAACTTTCGTTCATCAATGACACAGCGCCCTCCTGTGGTCAGGTCGAGCTCAGCACATTATGCTTCCCTGAGAAGATCTCCAACCCCCACATCACTGAAAATCGCGAGCCAGGAGCCCTGCGCCAGCTGCGCCGCTTCACACACATGAGCATCTGCCCAAACTACACCATCAGCTATGGAGTGGTTGCAGGATCTTCTGTACCGTTTGCGGTCGACGACTCCACTTCTGAACTAGTGGTCACAGCACAAGTGGACCGCGAGGAGAAGGAAGTGTATCATCTGGATATAGTCTGTATGGTACGAACAGAAAGAAATCTGGAGGAGGTCTTCAGATCTTTACATGTGAACATCTATGATGAAGATGATAATTCTCCTTATGTCAACGGGACTGACACTGAAGACGTCTTAGTAGAGTTTGACCGCAGTGAGGGTACTGTGTTTGGGACTCTGTTTGTATATGACAGAGACACAACACCAGTTTATCCCACAAACCAAGTTCAAAATAAACTGGTGGGGACCCTGATGACAAATGACTCCTGGATCAAAAATAATTTTGCTATTGAACACAAGTTTAGGGAAGAGAAAGCTATTTTTGGAAATGTCCGTGGGACTGTTCATGAATACAAGCTGAAACTCAGTCAGAATCTGTCTGTGACGGAGCAGCGCTCATTTCTGTTGGGCTACCTGGTCAATGACACCACTTTTCCAGGCCCAGAGGGAACAGTGCTGTTACACTTTAATGTGACTGTCCTGCCAGTTCCCATTCGCTTCTCCAATGTCACTTATTCCTTCACGGTCTCACAGAAGGCAACAACTTACTCCCAGattggaaAAGTCTGTGTGGAGAACTGTCAGAAGTTTAAGGGCATTGATGTGACCTATCAGTTAGAGATTGTCGACAGGAACATCACTGCTGAAGCTCAGTCCTGTTACTGGGCGGTTAGTCTTGCACAAAACCCGAATGATAATACAGGCGTTCTCTATGTGAACGACACCAAAGTGTTACGCAGACCAGAGTGCCAAGAGCTGGAGTATGTGGTCATTGCCCAGGAGCAGCAGAACAAGCTTCAGGCCAAGACACAGCTCACCGTCAGTTTTCAAGGCGAAGCAGATTCACTGAAAACGGATGAGCCACGATTTCCAGCTTGTGCAGAAAAGAGACAGCGAGGAGACTGTGAGGCGACTCGAGGCCTGGGAGCCCCAACAGGGAGATGCCAGTGGAGACAAGGCCGAGATAAAGGAATATCAAAAAGATACTCCACCTGTTCCCCCAACCTCGGCACGTGCCCTGATGGTTACTGTGATGCCATTGAGAGCAAGAACATCTCCATCTGTCCTCAGGATTGCTCCAGTGAGGCCATAATCGGCGGTTATGAAAGGGACCTGTATGGAATCAAAGCTGGACATGGGACCTGTTACTGCTTTGAAGGAAAGTGCTTCTGTGAAAGAGATGAACCGGAGGATGATATATGTAACGACATGTGCAAGACCGTCATTGCAACTGGTATCATCCTGTCCTTCATTGTCTCCGTTCTCCTGTCCTCGTACTTCATCCACCGTTACCACAAGACCACCCCAAAGCCACCCATTGCTTCTGCTGAAATGACCTTCCGTCGGCCAGCCCAGTCTTACCCTATCAGTTACTCGGCCAATAACGTTCGTCGCGCTTCTCTCGATTCCATGGAGAACCAGGTGGCCATTGACACCTTCAAAATACCTGAGGATCCGAAATGGGAGTTTCCACGAAAGAACCTGGTGTTGGGTAAAACTCTTGGAGAAGGAGAGTTTGGGAAGGTGGTGAAGGCCACAGCTTTCCGACTCAAAGGAAAAGCTGGATACACTACGGTTGCTGTGAAAATGTTAAAAGAAAATGCATCTCACAGCGAGCTTCGAGACCTCCTCTCAGAGTTCACATTGCTTAAGCAGGTtaatcaccctcatgtcattaaAATGTATGGAGCTTGCAGCCAGGATGGTCCATTATACTTAATTGTTGAATACGCCAAGTATGGTTCACTACGTAACTTCCTGAGAGAGAGCCGCAAAGTTGGGCCAAGCTATATGGGCAATGATGCCAACCGCAACTCCAGCTACTTGGAAAACCCAGACGAGAGAGCTCTGACCATGGGCGACCTGATCTCGTTCGCCTGGCAGATCTCTagaggaatgcaatacctagctGAGATGAAGCTTGTTCACAGAGACCTGGCTGCAAGGAATGTGCTGGTGGCAGAAGGAAGGAAGATGAAAATATCAGACTTTGGTTTGTCTCGAGATGTCTATGAGGAAGATTCATACGTGAAGAGGAGCAAGGGTCGTATTCCTGTCAAATGGATGGCTATAGAGTCTTTGTTCGATCACATCTACACCACACAAAGTGATGTCTGGTCATTTGGTGTTCTCTTATGGGAGATTGTGACTCTTGGAGGAAACCCCTACCCAGGAATTGCCCCTGAACGACTTTTCAACCTTCTGAAGACCGGCTACAGGATGGAGAAACCAGAGAACTGCACTGATGAAATGTACAATCTGATGCTTCGCTGCTGGAAACAAGAGTCAGATAAACGTCCCACTTTCTCAGACATCAGCAAAGAACTGGAGAAGATGATGGTGAAAAGCAGAGACTATCTGGATCTTGCGGCCTCCACACCGGCAGACGCTCTCCTATATGACGACTCTCTCTCTGAAGAGGACACACCCTTAGTGGACTGTAGTAACGCCCCTCTCCCTCGAACCCTCCCCTCCACTTGGATTGAAAACAAGCTCTATGGTAGAATTTCCCATGCATTTACTAGATTCTAATACAGGGAACAAAATCAGTTTATCTTTTGCCTTCCATAGGAAGAGCTGTGATTGTGCTAACGGCATGGTTGCCAGCGACTTACCAATACTGCTCACGTTTTATAGATTCTGTAGTATCTGGATCTAGGGATCAGATGTGTCATTTGGACCTGCTTCCGATGTACTTTATTATctgaaatatacattttaaacggATGTATTAGTATTCAAGTATTATTACTACTGATTTAAAAGTGaattcatttttatataaacacacacagtgaggAATTAATGTGTTTTTAGATTCACATTTGTGAATTTTCTATTAGTTTGGCAGCACTTTAAGTTAGACTTTTACATTTGAAACAGGTCCCCTGTGCTCTGGGTGTGCTCTCTCTGTAATATCCTGAATGTATTACAGAAAATGAGTGTTTAAAAGTAGATGGAGTCAGTTCTGAAAGCAGTAAGGCTTTTGAATTTAACTCTTCCTTTTTTTTAAGATCATAAAAATATGCAAGTGCTCCCCAAAAATGAGGCATTAACAGAGGAATAACTAAGCAATAAAATGGCCAGCAGTAAGGCAGTCGCTATGCATTTCTTGGAGTACACGAAAACGGATtatgtttcatttaaaagcatctACTGTACATTTAAAAGCCAAAGACAACAATGACGTCACAGAATATACAATGTCACCGCAGCAGAATATTGACCAAAAAACTCTCAAAGGACCAAAGAATGATTTCATGCTTACTGTGCTGTTTAATGTAACTGAGTTTTGTTCGAGAGCCTTACTGTCTGGACTTAATGCTTCCTCAGTGCAGAAAAAATCATATGTTCTCGTTTTTAGGCATGTCATACCCGAACTGGCCAGAGAAGAGCCCGGTACCGCTCAACAGACTCGATGCCACTAACCCTGTCTTTACAAGATATGCCAATGATAGTGTTTATGCAAACTGGATGGCTTTGCATTCTCCCGCAAAAATCGTGGACACAATCGATAGTTAAAAACGCAAGCCAAAATCAATGGCGGAAAAGACACGGGGGGTGGGGAGATGTGTATATTTCTatgaaactgtatatatatatgtatatgttgtaTGATGATAAAGCGGGTTCCCTTTTATTTCTGCTGTTGTGTAGATGATGAGAGATTTCAAATTGGCTGGAAATGCATAAACATGCTTCAAGCAGCTTCTAGGTGATTGTTACCACGAGGCCTCCGTGCTGTATCTCTGCATGACTCTGTACAGTTTAATGTCCATGTTTAAGTGCCTGTGCCGCTTCTGTTAGAGAACACCATAATAAATGCATGACCGAGACGATCTTGGTCCCACTCCAGGAATTAAAGGGAGCTTCTTTACCATCAATTACTGCAGAAGTTTGTCGCAAATACTGGACATGTTTATTTGGAAAAAGAAAAGTTTGTTTTTTCTTGATCGTGTGTGAGGATTGGAAAGaatcatgtttattttgtttccttGTTTTTTAAGTAATGATATTTCTAGGCTCTGTGGTGATAATGAGTTATGCATATTGCCATAACAGAGTATgaatatgtttaatttaatgtcatatattgtgatttaattttcattCCCTGTAAAGACATTATTTGTGCAACAATAACTACATTAAGCTGAGTGTGATTCTTCAATATGTTGTCCGAAGATTACGTTTCAAACAATAAAACCTGTTAGAATATGTcttgttttcatttctgtgtgtttCAGTTCTATTTCATTTTCAGACTTCATGAAGATTAAAAGGCGATTTCTTcattatattcaaataaaacTCTCCCAAAA

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0033674 positive regulation of kinase activity biological_process
GO:0072114 pronephros morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:0016310 phosphorylation biological_process
GO:0014707 branchiomeric skeletal muscle development biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0045121 membrane raft cellular_component
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko05200 Pathways in cancer
ko05230 Central carbon metabolism in cancer
ko05216 Thyroid cancer
ko05223 Non-small cell lung cancer
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-980526-307 Enables protein homodimerization activity. Acts upstream of or within several processes, including autonomic nervous system development; axon extension; and branchiomeric skeletal muscle development. Predicted to be located in membrane raft and plasma membrane. Predicted to be part of receptor complex. Predicted to be active in axon. Predicted to be integral component of plasma membrane. Is expressed in nervous system; pharyngeal arch; presumptive enteric nervous system; pronephric duct; and vagal neural crest. Used to study Hirschsprung's disease. Human ortholog(s) of this gene implicated in several diseases, including Hirschsprung's disease; congenital central hypoventilation syndrome; familial medullary thyroid carcinoma; multiple endocrine neoplasia type 2A; and multiple endocrine neoplasia type 2B. Orthologous to human RET (ret proto-oncogene).

Ensembl:

ensembl_id ENSDART00000139237

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012811 lncRNA downstream 35735 25546885 ~ 25548821 (-) True XLOC_006634
TCONS_00012809 lncRNA downstream 43870 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012804 lncRNA downstream 99823 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012801 lncRNA downstream 107186 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012796 lncRNA downstream 362062 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012823 lncRNA upstream 136623 25769379 ~ 25773925 (-) True XLOC_006639
TCONS_00013791 lncRNA upstream 143633 25776389 ~ 25778815 (-) True XLOC_006640
TCONS_00012826 lncRNA upstream 192571 25825327 ~ 25827135 (-) True XLOC_006642
TCONS_00013792 lncRNA upstream 213776 25846532 ~ 25852256 (-) False XLOC_006643
TCONS_00013793 lncRNA upstream 213776 25846532 ~ 25853311 (-) True XLOC_006643
TCONS_00012812 mRNA downstream 3253 25569831 ~ 25581303 (-) True XLOC_006635
TCONS_00012807 mRNA downstream 35674 25534984 ~ 25548882 (-) False XLOC_006634
TCONS_00012808 mRNA downstream 35674 25535043 ~ 25548882 (-) False XLOC_006634
TCONS_00012806 mRNA downstream 35823 25531004 ~ 25548733 (-) False XLOC_006634
TCONS_00012802 mRNA downstream 99897 25473223 ~ 25484659 (-) False XLOC_006632
TCONS_00012815 mRNA upstream 9294 25642050 ~ 25719628 (-) False XLOC_006637
TCONS_00012816 mRNA upstream 49919 25682675 ~ 25720876 (-) False XLOC_006637
TCONS_00012817 mRNA upstream 49919 25682675 ~ 25720907 (-) True XLOC_006637
TCONS_00012818 mRNA upstream 92791 25725547 ~ 25745089 (-) False XLOC_006638
TCONS_00012819 mRNA upstream 95138 25727894 ~ 25750910 (-) False XLOC_006638
TCONS_00012810 other downstream 35942 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 53908 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 385331 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 386493 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012759 other downstream 1298166 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012832 other upstream 934310 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 2018423 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 2057404 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 2546678 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 2644142 28276898 ~ 28295414 (-) False XLOC_006661

Expression Profile

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