RNA id: TCONS_00012816


Basic Information

Item Value
RNA id TCONS_00012816
length 790
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_006637
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25642050 ~ 25720907 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGAACTGAAGAGGCCTGTGATGCAGTTGGGTGACTTCACACAGTGAGATAATAATTAAACCGTGAACAAACTTTAGCAGTAGAACTTATCGAGCATTCATGCAGGTCGTCAGCAGGAAGTTTACTCCCAGCAGGGCTGTGTGAGACACATCATGAAGTTTACAAGCTGAAAATGGACGAGGCGCTGATAAAATTCCATAATGAACTTCCGTACAACATTAGTGTTTACTACACCTCGGATTACTGTTATAAGTGTCTTTATCAGCCTCTTGCCACTCTTGGAATTGGGCAGAGTAATATTTCTGTGATTGTAAGCACACAATTCAAATTGACTCTACAAATCACATCAATAGTTGGAACCGCCAATCTTTGCAGTCTGAGTCAGACATTTGAGGAAGCTGGCCATTATTCTCTGTGGATGAGGAAGCAGGGCTTGCTAAAGGATGTAACCTGCTCTCTCACTGTGGACAGGAGTCCAAATAACGCATACCTGCCACTGTTGGCGGCGTTCTTGATTCTGACTTTCATTGCTGCATTTTGGGTCTCTTTACCTTATATACTCAGATTACGCTGTTCTCAGAGGCTAAAGAATCGAATGTGTCACCACGGGTCTCAGAACTCCATGGAAATGgaGGAGCCTAATACCGAACAACAAATTGACGAAAGCAAACCGAAATCATCAAGACTGAAGTCACTGGACACATTCAGAGGATTTTCCCTGACTGTGATGGTGTTTGTGAATTATGGAGGAGGTGGTTACTGGTTTTTCCAACATGCACCATGGAATG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-809 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in mucopolysaccharidosis type IIIC and retinitis pigmentosa 73. Orthologous to human HGSNAT (heparan-alpha-glucosaminide N-acetyltransferase).

Ensembl:

ensembl_id ENSDART00000142404

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012811 lncRNA downstream 133854 25546885 ~ 25548821 (-) True XLOC_006634
TCONS_00012809 lncRNA downstream 141989 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012804 lncRNA downstream 197942 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012801 lncRNA downstream 205305 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012796 lncRNA downstream 460181 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012823 lncRNA upstream 48503 25769379 ~ 25773925 (-) True XLOC_006639
TCONS_00013791 lncRNA upstream 55513 25776389 ~ 25778815 (-) True XLOC_006640
TCONS_00012826 lncRNA upstream 104451 25825327 ~ 25827135 (-) True XLOC_006642
TCONS_00013792 lncRNA upstream 125656 25846532 ~ 25852256 (-) False XLOC_006643
TCONS_00013793 lncRNA upstream 125656 25846532 ~ 25853311 (-) True XLOC_006643
TCONS_00012814 mRNA downstream 49919 25584556 ~ 25632756 (-) False XLOC_006636
TCONS_00012813 mRNA downstream 49919 25584556 ~ 25632756 (-) True XLOC_006636
TCONS_00012812 mRNA downstream 101372 25569831 ~ 25581303 (-) True XLOC_006635
TCONS_00012807 mRNA downstream 133793 25534984 ~ 25548882 (-) False XLOC_006634
TCONS_00012818 mRNA upstream 4671 25725547 ~ 25745089 (-) False XLOC_006638
TCONS_00012819 mRNA upstream 7018 25727894 ~ 25750910 (-) False XLOC_006638
TCONS_00012820 mRNA upstream 14261 25735137 ~ 25745148 (-) True XLOC_006638
TCONS_00012821 mRNA upstream 42032 25762908 ~ 25774183 (-) False XLOC_006639
TCONS_00012822 mRNA upstream 44598 25765474 ~ 25767210 (-) False XLOC_006639
TCONS_00012810 other downstream 134061 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 152027 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 483450 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 484612 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012759 other downstream 1396285 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012832 other upstream 846190 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 1930303 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 1969284 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 2458558 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 2556022 28276898 ~ 28295414 (-) False XLOC_006661

Expression Profile

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