RNA id: TU580


Basic Information

Item Value
RNA id TU580
length 264
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G483
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1255040 ~ 1255303 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTCTTGCGGTGTGCTGTCAGCATGGGAGGTGTACAGCGACAATATAATTTAGCAGCTTGGAAGAAAAAGACATATGTTAAAACACAGACACTGTGACATTTTTCAGTTTGTTCTATGGTCTTTTTCTAACTTTAGACAAACATTGTTAACTGAGAGCTCCTTCTGTTGCTTTGTTCTCTCACAATGCACATTTAAGAGGAAAAAAATAAATAAATCTTGCAATACAAATAATAGGGAATTGTTAGGCATAAGGACAGAAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577 lncRNA upstream 1971 1252796 ~ 1253069 (+) True G480
TU576 lncRNA upstream 6227 1248550 ~ 1248813 (+) True G479
TU570 lncRNA upstream 32523 1222293 ~ 1222517 (+) True G473
TU505 lncRNA upstream 59725 1191601 ~ 1195315 (+) False G416
TU506 lncRNA upstream 59725 1194228 ~ 1195315 (+) True G416
TU597 lncRNA downstream 48554 1303857 ~ 1304057 (+) True G499
TU545 lncRNA downstream 106740 1362043 ~ 1363359 (+) True G449
TU600 lncRNA downstream 111824 1367127 ~ 1367360 (+) True G502
TU604 lncRNA downstream 113032 1368335 ~ 1368897 (+) True G506
TU603 lncRNA downstream 116816 1372119 ~ 1374608 (+) True G505
CI01000000_01209256_01229839.mRNA mRNA upstream 24681 1208489 ~ 1230359 (+) True CI01000000_01209256_01229839
CI01000000_01196208_01208022.mRNA mRNA upstream 46683 1196208 ~ 1208357 (+) True CI01000000_01196208_01208022
CI01000000_01176488_01180221.mRNA mRNA upstream 74771 1176450 ~ 1180269 (+) True CI01000000_01176488_01180221
CI01000000_01149697_01163047.mRNA mRNA upstream 91060 1149697 ~ 1163980 (+) True CI01000000_01149697_01163047
CI01000000_01105760_01112812.mRNA mRNA upstream 141088 1105760 ~ 1113952 (+) False CI01000000_01105760_01112812
CI01000000_01347674_01352321.mRNA mRNA downstream 92371 1347674 ~ 1353228 (+) True CI01000000_01347674_01352321
CI01000000_01405606_01410241.mRNA mRNA downstream 150303 1405606 ~ 1410503 (+) True CI01000000_01405606_01410241
CI01000000_01459294_01485147.mRNA mRNA downstream 203991 1459294 ~ 1485311 (+) False CI01000000_01459294_01485147
CI01000000_01511690_01517631.mRNA mRNA downstream 256387 1511690 ~ 1517719 (+) True CI01000000_01511690_01517631
CI01000000_01680507_01690297.mRNA mRNA downstream 425204 1680507 ~ 1691194 (+) True CI01000000_01680507_01690297
TU431 other upstream 578103 671842 ~ 676937 (+) True G350
TU325 other upstream 747968 503209 ~ 507072 (+) True G252
TU531 other downstream 169818 1425121 ~ 1432854 (+) True G435
TU678 other downstream 560150 1815453 ~ 1908808 (+) False G579
TU3086 other downstream 3198475 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 3470683 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8949528 10204831 ~ 10321679 (+) True G6811

Expression Profile