RNA id: TCONS_00012819


Basic Information

Item Value
RNA id TCONS_00012819
length 3460
RNA type mRNA
GC content 0.44
exon number 14
gene id XLOC_006638
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25725547 ~ 25750910 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCACTTCCTGATATAAGCTTGCGCCTCTGGTTGTGTCATGCTACGGGGAATTCGCTCTCAAAACAAGCCAAACAAAGATCTTTCAGGCAGTCCTCCTCGTTTCCCCCCGAGCAGTTGAAAAAGCGACTTTTTCAGGCAGAGTGTAACCTTGGCAAACAAAATGGACTACTGGAGTGCCTTAGAGGTGTACAAGGAGACTGCGCTGTTGTACATCGAGGAGGCGCAGAGTTATGTGAATTCTCAGTGTGCTGGTCTGGAGCCATGGCAGATCATTGCAGCCACTTTGCTGTCCACACTCGGGGTAGTATGGCTAAAGGACTTTCTTTTCCAACAAGAGAGTCTGACGTCAAGAGTAAAGAAGCAATTCTTCagaatcatcagaaaaatcccATTTATTGGAGCATCAATTCAGAATCAGCTCAACAAAGCTCTGGATGACATGTCAATGAGTCTGTGTACGCTGAAGGAGGGCATGAGCTACACCAAACTCCTGCCAGCGCAGGGCCTCACCCACAAACAGCTCCTTGACAAGATCAGGGAGTATGAGACACTGAGTGAGGTGAACTGGGCGAAAGGCAAAGTCTCGGGTGCTGTTTACTGGGGGGATGAGAAGCTCACAGATCTCCTGGTGAAGGTGTATGGGGAGTTTGCCTGGACCAACCCTCTCCACCCAGACATATTCCCTGGAGTTAGGAAGATGGAGGCAGAAGTGGTGCGGATGACATGTGCCCTCTTTAATGGAGGACCAGACTCCTGCGGCACAGTTACTTCAGGGGGAACCGAAAGCATCCTGATGGCATGCAAGGCATACAGAGACATGGCTCATGAACGTGGCATCAAACACCCGGAGATCATTGCACCAATCAGTGTCCATGCGGCGTTTGACAAAGCAGCACATTACTTTGGGATGAAACTCATTCATGTACCGTTGGACAATAAGACCATGAAAGTTGATGTGAAGGCCATGAGGAGAGCCATCACTAAAAACACAGCAATGCTGGTTTGTTCAGCTCCTCAGTTCCCCCATGGAATCATGGATCCTGTAGAAGAAGTGGCAAAGCTTGCAGTAAAGTATAACATCCCATTCCACGTGGATGCATGCTTGGGTGGGTTCCTGATAGTGTTTATGGAAAAAGCAGGTTTCAAGCTGGCTCCTTTTGATTTCCGGGTCAAAGGCGTGACCAGTATCTCAGCTGATACACATAAgTATGGTTATGCTCCCAAAGGCTCCTCAGTTGTGCTCTACAGCAACAGGAAGTTTCGCCACTACCAGTATTTTGTAGCACCTGATTGGCAGGGAGGAATTTATGCCTCTCCATCCATGGCTGGCTCTCGGCCTGGAGGCATCATTGCTGCCTGCTGGGCTACTATGATGCACATGGGTGAGAAAGGATACGTTGAGGCCACCAGGAAAGTTGTGGAAACAACTCGCAAAATCAAAACGGGAATCCGTAAAATAGATGGGGTGTTTGTATTTGGGGATCCAGAGGTGTCTGTGGTGGCTCTGGGCTCAGATGATTTTGATATCTTTCGCTTATCAAATGCACTGACTTCAAAGGGCTGGAATCTCAACACTCTGCAGTTTCCATCTAgcATCCATATTTGTGTCACAATGCTGCACACACAGTCTGGTGTAGCGGAGCAGTTCATTAGTGACGTGAAGAAAGAAGTAGCCATTATTATGAAGAATCCGAAAGAGAAGACCACAGGAATGGGAGCCATCTACGGCATGGCCCAGTCCATTCCTGACCGATCGATGGTGACCGAGGTCTCACAGGGCTTTTTGGACTGCCTCTACAGCACTGAGGTGCCCAAGATGCAAAACAAGCACCACAAAAACCACAAGAATCACATAAACGGCAACTCCAAAGTGCACTGAGAGGGACTGTCAGGGGCTCCAGCCTCAGCTGGCCGAAGGGATGTTCACCACaatcatctattcattcatttacttcatTCAGTAACTAACGATTTCACTTATAAGCCATAGTCACCTGATATTGTGGGATTTCGTGATCTGGGGAGCGAAAATATCCTGTCTGTGACTTAAAAGATGCTGCACAAGAGTCTGTGTGAGTCCGCGAAGGGCCTGGGACATCTTAATCTAATTCTGAGTGCAGTTTTTCTTACTTTATTGACCACCGTATGTATTTGATCATCATTACTATCGAAAGTGTTTTCTGCCGCTTAAACCTCAGGATACAAAGGGCATAATAATTATTTGAGCTATTCACAAACTGTTTTCCCACAGTTTCTGGGATTTAAATAATGCAGGTGAAGAGAATAGCGACGTCACAGATAAACTGTggtgtttttattgttaaatatatattccCAATATAGTTTTATCATTAGAAACTTGAAAACATGACCAACCATTTTAGGGTGGTAGTACAGCTCAGGTGAACGTGTactgcaaatgttttatttattcattttttaaatcccCATAACTAGCACAGATTTTGATAATCCAATCGCAAAACATTCAGTGTTTACGTGAAAAGATCGTACTGATTTTAAACACAATATCAGGACAAAATGTAACAAAATCAATCGACCAGGTTATGAAGTTCACCTTATTTTCTATCTAATAGGGTTTATATTCATCACATCACCCTATCTACCTCAGATCTTGTTCAGATTGTTTCCTTTTGTCTCAATCCTGAGAAAAGTCACCTAAGTGGACATTTTAATCATCAGTCAATGCCATTCTCCAGATTATGGTACTGACAACGCTCTCCTTTTGATTCGTGTTTgcgtgttttattcatttaaggtCTTTTGTTCCAGCTCAGCTGAATGACAGCAAGAAGGGAAATTAATTTGTGCAGGTCGATGAAATGAGGAAGTGATGACATGGTACCATGGGAACATCACACTAGATCTTGTCAGCAATTTAATCCTTAAGCACTCATCATATTTGTGACCACTGTGTgcgtttttatattataaatcacTAATATAATGTCTCATATTTCaatattgtttgtatttttaactTGTACTTCTTGTGGGGGGCTTCAGGTAGGAGGCGGGACGGTTTTCTTTTTCGAATGATACCACTGTAGCACAGTGTAGTCTCAAAAACTGTAACATGCCTTAGTTTAAGACTTAGATGTGGAAGTTTGTCTTCAAACAGTTACCCTTCTTGCCTATTGAAGCATTTTAATGTCTGTTTGCAATAGTCTGTAATTACTGTAACTACTGAAACTGAGGCACCTTGATCGGAGTTTTTGAAGCATACATGACCTCTACGCTTGTAGTTGTTTAAAGCACAAAACTAACAGCATTCACCTAAATGCCTTTCGCAGACGTCAGGGTGTGTGCTAGAAGGATAACATAGTAGCGATATCAGCCTCAGGGACTAGGCCTTTACCACATCATGCGGTCCATTTCAATTTTGTCCTGTAATGTTTGCTGTTCcgatataaatcaataaatatggtcttaaaaata

Function

GO:

id name namespace
GO:0030149 sphingolipid catabolic process biological_process
GO:0006665 sphingolipid metabolic process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0008117 sphinganine-1-phosphate aldolase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016831 carboxy-lyase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko04071 Sphingolipid signaling pathway

ZFIN:

id description
ZDB-GENE-070410-24 Predicted to enable sphinganine-1-phosphate aldolase activity. Predicted to be involved in sphingolipid catabolic process. Predicted to act upstream of or within carboxylic acid metabolic process. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including heart; intestine; kidney; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in nephrotic syndrome type 14. Orthologous to human SGPL1 (sphingosine-1-phosphate lyase 1).

Ensembl:

ensembl_id ENSDART00000111567

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012811 lncRNA downstream 179073 25546885 ~ 25548821 (-) True XLOC_006634
TCONS_00012809 lncRNA downstream 187208 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012804 lncRNA downstream 243161 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012801 lncRNA downstream 250524 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012796 lncRNA downstream 505400 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012823 lncRNA upstream 18469 25769379 ~ 25773925 (-) True XLOC_006639
TCONS_00013791 lncRNA upstream 25479 25776389 ~ 25778815 (-) True XLOC_006640
TCONS_00012826 lncRNA upstream 74417 25825327 ~ 25827135 (-) True XLOC_006642
TCONS_00013792 lncRNA upstream 95622 25846532 ~ 25852256 (-) False XLOC_006643
TCONS_00013793 lncRNA upstream 95622 25846532 ~ 25853311 (-) True XLOC_006643
TCONS_00012817 mRNA downstream 6987 25682675 ~ 25720907 (-) True XLOC_006637
TCONS_00012816 mRNA downstream 7018 25682675 ~ 25720876 (-) False XLOC_006637
TCONS_00012815 mRNA downstream 8266 25642050 ~ 25719628 (-) False XLOC_006637
TCONS_00012814 mRNA downstream 95138 25584556 ~ 25632756 (-) False XLOC_006636
TCONS_00012821 mRNA upstream 11998 25762908 ~ 25774183 (-) False XLOC_006639
TCONS_00012822 mRNA upstream 14564 25765474 ~ 25767210 (-) False XLOC_006639
TCONS_00012824 mRNA upstream 44601 25795511 ~ 25819825 (-) True XLOC_006641
TCONS_00012825 mRNA upstream 73435 25824345 ~ 25842074 (-) False XLOC_006642
TCONS_00012834 mRNA upstream 1029094 26780004 ~ 26799244 (-) False XLOC_006647
TCONS_00012810 other downstream 179280 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 197246 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 528669 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 529831 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012759 other downstream 1441504 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012832 other upstream 816156 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 1900269 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 1939250 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 2428524 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 2525988 28276898 ~ 28295414 (-) False XLOC_006661

Expression Profile

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