RNA id: TU702


Basic Information

Item Value
RNA id TU702
length 1143
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G593
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1733247 ~ 1734389 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGTTTTTGCATGACCATCAAGATCAATAGACCTGCAACAACCAGAAGAAGCTAAACAGGGAGGCTTAAAGCAGCAAAAAATAAATAAATATATATATATATATTTTAAATCACTCTGAGTCACAGCCTGCCAAAATGTGAAAATTCAGGGCACCACTCCATGTTTCTGCCACTCATCTGGCCTTCCAGCATCACACTTTGACTTGCAAGAGACCTGTCATTAAAAAAAAAAAAAGAAAGAACTACAGGAATGACACTGTTTTACCCCTCTCCTGCTTCCTCTGCCCCGTCTGTTCCTGTCAGCAAAGACTCAGAGATCCAGGTTCACAGGAAGTAAGGTGACAGGCTCTGACACACGGCCTCTCCAGCGTGTTTGTGCCGCAGTTCCTGACTGAATATGTGTGTGTGCCATCATGCTCGCCGGGTTTGTGGGTGCTGTCAGAGCCCAGCATATTGTGCAACAAGACGCTATTTTGCCAAAGACAGAAGAGAAGATGACACAAGGTGGGGGGTCTTTTCTCAGCACAGGGGTCTGTTCTCAGGCCTGGGGCTTTGCGAGTGTACAAACAGGGAGCTGACAGTGAAATGACTCAGACTCTGCCTGTGTTAACAAGCAATCTGGAGGTCCTCCTTAGCAGCAATACAAACAGAGAAAACTCTCATTTAACTCCTGATTAGACCCCCTGATTCCCAACAATGTCACGCTGGGAGGCTGCAGATAATTGTGGGTCAATCACAGCACAGGACATCTAAAAATACAGCTTCACCACCAGCCTCTGATGCTGACATTCAGGCTGAGCGTGTCGTGAAGAAGCTTGAGCTCTGGTGCCAGGTGGCTCAATAAGGATCCAGGAAAAGTTGAGAGAGCCATGGAGACACCGGGGGTTGGTTTCTTCCCACCGGCAGACAGGGAACGTTGTCCATCTGTCTCTCAGAGAGACAGAAGCAGCATGGCACAACACTACAGAAAGGCCATGGGATAATGAGCGTAGATGTATAGAAACTTTTATAAGGAAAGACAGGATTTGCTCACAGGTCTGAGATATAGGGACTAGTTGTCACATTTTTTTCTGTATTGGTACATATCATAAAGTCTACAAAAAAAGAAAAGCTATTTCCACCATTATTGCTGCCCCAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU674 lncRNA upstream 26262 1706770 ~ 1706985 (+) True G576
TU524 lncRNA upstream 242900 1487224 ~ 1490347 (+) True G428
TU547 lncRNA upstream 264445 1458212 ~ 1458485 (+) True G451
TU618 lncRNA upstream 329113 1403153 ~ 1404134 (+) True G520
TU601 lncRNA upstream 338627 1394342 ~ 1394620 (+) True G503
TU679 lncRNA downstream 33528 1767917 ~ 1908159 (+) False G579
TU684 lncRNA downstream 33528 1767917 ~ 1908159 (+) False G579
TU681 lncRNA downstream 99600 1833989 ~ 1904744 (+) False G579
TU754 lncRNA downstream 107933 1842322 ~ 1843168 (+) True G645
TU677 lncRNA downstream 170081 1904470 ~ 1908159 (+) True G579
CI01000000_01680507_01690297.mRNA mRNA upstream 42053 1680507 ~ 1691194 (+) True CI01000000_01680507_01690297
CI01000000_01511690_01517631.mRNA mRNA upstream 215528 1511690 ~ 1517719 (+) True CI01000000_01511690_01517631
CI01000000_01459294_01485147.mRNA mRNA upstream 247936 1459294 ~ 1485311 (+) False CI01000000_01459294_01485147
CI01000000_01405606_01410241.mRNA mRNA upstream 322744 1405606 ~ 1410503 (+) True CI01000000_01405606_01410241
CI01000000_01347674_01352321.mRNA mRNA upstream 380019 1347674 ~ 1353228 (+) True CI01000000_01347674_01352321
CI01000000_01848610_01851296.mRNA mRNA downstream 113154 1847543 ~ 1851898 (+) True CI01000000_01848610_01851296
CI01000000_01879407_01879559.mRNA mRNA downstream 145018 1879407 ~ 1879980 (+) True CI01000000_01879407_01879559
CI01000000_01898604_01899281.mRNA mRNA downstream 163653 1898042 ~ 1899281 (+) True CI01000000_01898604_01899281
CI01000000_01899373_01901550.mRNA mRNA downstream 164984 1899373 ~ 1901682 (+) True CI01000000_01899373_01901550
CI01000000_01916310_01925119.mRNA mRNA downstream 181663 1916052 ~ 1925390 (+) True CI01000000_01916310_01925119
TU531 other upstream 300393 1425121 ~ 1432854 (+) True G435
TU431 other upstream 1056310 671842 ~ 676937 (+) True G350
TU325 other upstream 1226175 503209 ~ 507072 (+) True G252
TU678 other downstream 81064 1815453 ~ 1908808 (+) False G579
TU3086 other downstream 2719389 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 2991597 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8470442 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 8692834 10427223 ~ 10433018 (+) True G6820

Expression Profile