RNA id: TCONS_00012822


Basic Information

Item Value
RNA id TCONS_00012822
length 378
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_006639
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25762908 ~ 25774183 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGGCTCTGCTCATAACAGAAGTGCTATGCCATTTAATTCTGCCAGTCCTAGAGTCGTCACCAACCAGTACAACAACCCGGCTGGCCTGTACTCCTCTGAAAACATCAAGAACTTCAACAGCGCAGTGGATGAAGTCCAGACGACCGCTGCCTCCAGTGAAGCTAGCAGGAACTCAGATCCCAGTAAACCAGGCCACACAAAAGCTGCTATAGCTGCAGATTCAGAGGTGTACAAAATGCTGCAGGAGAATCAGGAATCCAATGAACCTCCTCGCCAGTCGGCCTCTTTTAAAGTTCTGCAGGAGATCCTGGAAACTGgaactttgatgcggtggctgaagtatgagaaggagcgctatgctgctgaagaattttcc

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0001725 stress fiber cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005912 adherens junction cellular_component
GO:0031941 filamentous actin cellular_component
GO:0030018 Z disc cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003779 actin binding molecular_function
GO:0051371 muscle alpha-actinin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5227 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be located in cytoskeleton. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in several structures, including anterior axial hypoblast; digestive system; epidermis; nervous system; and yolk syncytial layer. Orthologous to human PDLIM1 (PDZ and LIM domain 1).

Ensembl:

ensembl_id ENSDART00000131792

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012811 lncRNA downstream 216653 25546885 ~ 25548821 (-) True XLOC_006634
TCONS_00012809 lncRNA downstream 224788 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012804 lncRNA downstream 280741 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012801 lncRNA downstream 288104 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012796 lncRNA downstream 542980 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012823 lncRNA upstream 2169 25769379 ~ 25773925 (-) True XLOC_006639
TCONS_00013791 lncRNA upstream 9179 25776389 ~ 25778815 (-) True XLOC_006640
TCONS_00012826 lncRNA upstream 58117 25825327 ~ 25827135 (-) True XLOC_006642
TCONS_00013792 lncRNA upstream 79322 25846532 ~ 25852256 (-) False XLOC_006643
TCONS_00013793 lncRNA upstream 79322 25846532 ~ 25853311 (-) True XLOC_006643
TCONS_00012819 mRNA downstream 14564 25727894 ~ 25750910 (-) False XLOC_006638
TCONS_00012820 mRNA downstream 20326 25735137 ~ 25745148 (-) True XLOC_006638
TCONS_00012818 mRNA downstream 20385 25725547 ~ 25745089 (-) False XLOC_006638
TCONS_00012817 mRNA downstream 44567 25682675 ~ 25720907 (-) True XLOC_006637
TCONS_00012816 mRNA downstream 44598 25682675 ~ 25720876 (-) False XLOC_006637
TCONS_00012824 mRNA upstream 28301 25795511 ~ 25819825 (-) True XLOC_006641
TCONS_00012825 mRNA upstream 57135 25824345 ~ 25842074 (-) False XLOC_006642
TCONS_00012834 mRNA upstream 1012794 26780004 ~ 26799244 (-) False XLOC_006647
TCONS_00012838 mRNA upstream 1233184 27000394 ~ 27038407 (-) False XLOC_006648
TCONS_00012839 mRNA upstream 1565446 27332656 ~ 27354033 (-) False XLOC_006651
TCONS_00012810 other downstream 216860 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 234826 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 566249 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 567411 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012759 other downstream 1479084 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012832 other upstream 799856 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 1883969 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 1922950 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 2412224 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 2509688 28276898 ~ 28295414 (-) False XLOC_006661

Expression Profile

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