RNA id: TU810



Basic Information


Item Value
RNA id TU810
length 309
lncRNA type intronic
GC content 0.39
exon number 1
gene id G700
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1919256 ~ 1919564 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTGCATCTCCATAAAGTTGGTCAGCAGCAGGAAGCATGAAGTGCTCTAAAACTTCCTGGTATATGGCTGCGTTGACCTTGGACCTCAGAAAACACAGTGGACCAACACCAGCAGATGACATGGCACCCCAAACCATCACTGACTGTGGAAACTTTACACTTGACCTCAAGCAACATGGATTGTGTGCCTCTCCTCTCTTCCTCCAGACTCTGGGACCCTGATTTCCAAAGGAAATGCAAAATTTACTTTCATCAGAGAACATAACTTTGGACCACTCAGCAGCAGTCCAGTCTTTTTTGTCTTTAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU809 lncRNA upstream 314 1918732 ~ 1918942 (+) True G699
TU679 lncRNA upstream 11097 1767917 ~ 1908159 (+) False G579
TU822 lncRNA downstream 104197 2023761 ~ 2023971 (+) True G710
TU829 lncRNA downstream 118469 2038033 ~ 2038258 (+) True G717
TU830 lncRNA downstream 118913 2038477 ~ 2038716 (+) True G718
TU831 lncRNA downstream 119293 2038857 ~ 2039092 (+) True G719
TU833 lncRNA downstream 120800 2040364 ~ 2040732 (+) True G721
CI01000000_01899373_01901550.mRNA mRNA upstream 17574 1899373 ~ 1901682 (+) True CI01000000_01899373_01901550
CI01000000_01898604_01899281.mRNA mRNA upstream 19975 1898042 ~ 1899281 (+) True CI01000000_01898604_01899281
CI01000000_01879407_01879559.mRNA mRNA upstream 39276 1879407 ~ 1879980 (+) True CI01000000_01879407_01879559
CI01000000_01848610_01851296.mRNA mRNA upstream 67358 1847543 ~ 1851898 (+) True CI01000000_01848610_01851296
CI01000000_01680507_01690297.mRNA mRNA upstream 228062 1680507 ~ 1691194 (+) True CI01000000_01680507_01690297
CI01000000_01978179_01992602.mRNA mRNA downstream 58615 1978179 ~ 1992961 (+) True CI01000000_01978179_01992602
CI01000000_01996254_01997531.mRNA mRNA downstream 76510 1996074 ~ 1997617 (+) True CI01000000_01996254_01997531
CI01000000_02018856_02033091.mRNA mRNA downstream 99033 2018597 ~ 2034379 (+) True CI01000000_02018856_02033091
CI01000000_02080057_02086228.mRNA mRNA downstream 160267 2079831 ~ 2087510 (+) True CI01000000_02080057_02086228
CI01000000_02092375_02096188.mRNA mRNA downstream 172729 2092293 ~ 2096188 (+) True CI01000000_02092375_02096188
TU678 other upstream 10448 1815453 ~ 1908808 (+) False G579
TU531 other upstream 486402 1425121 ~ 1432854 (+) True G435
TU431 other upstream 1242319 671842 ~ 676937 (+) True G350
TU325 other upstream 1412184 503209 ~ 507072 (+) True G252
TU3086 other downstream 2534214 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 2806422 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8285267 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 8507659 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 9058925 10978489 ~ 10980872 (+) True G7018

Expression Profile