RNA id: TU829


Basic Information

Item Value
RNA id TU829
length 226
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G717
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2038033 ~ 2038258 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAATATGAGCTGCACATGATGACACCACATCTAATTTCAAGTAGGCCTGTTAAATACCTGATGAACACTTTATCCCAATATTAAATATACATTAGGCACTTTATTTCCACTTTTCGAATATATTAATAATTTCCAAACTGTTATGTGATGGGAAAAGGAAGAAGAATGAGTTCGGGAAAAGGCGGATTCGAACTCCAGTCGGTAGCATCAAAAGGTAATGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822 lncRNA upstream 14062 2023761 ~ 2023971 (+) True G710
TU810 lncRNA upstream 118469 1919256 ~ 1919564 (+) True G700
TU809 lncRNA upstream 119091 1918732 ~ 1918942 (+) True G699
TU677 lncRNA upstream 129874 1904470 ~ 1908159 (+) True G579
TU681 lncRNA upstream 133289 1833989 ~ 1904744 (+) False G579
TU830 lncRNA downstream 219 2038477 ~ 2038716 (+) True G718
TU831 lncRNA downstream 599 2038857 ~ 2039092 (+) True G719
TU833 lncRNA downstream 2106 2040364 ~ 2040732 (+) True G721
TU1506 lncRNA downstream 121428 2159686 ~ 2160082 (+) True G1323
TU1507 lncRNA downstream 126389 2164647 ~ 2165127 (+) True G1324
CI01000000_02018856_02033091.mRNA mRNA upstream 3654 2018597 ~ 2034379 (+) True CI01000000_02018856_02033091
CI01000000_01996254_01997531.mRNA mRNA upstream 40416 1996074 ~ 1997617 (+) True CI01000000_01996254_01997531
CI01000000_01978179_01992602.mRNA mRNA upstream 45072 1978179 ~ 1992961 (+) True CI01000000_01978179_01992602
CI01000000_01916310_01925119.mRNA mRNA upstream 112643 1916052 ~ 1925390 (+) True CI01000000_01916310_01925119
CI01000000_01899373_01901550.mRNA mRNA upstream 136351 1899373 ~ 1901682 (+) True CI01000000_01899373_01901550
CI01000000_02080057_02086228.mRNA mRNA downstream 41573 2079831 ~ 2087510 (+) True CI01000000_02080057_02086228
CI01000000_02092375_02096188.mRNA mRNA downstream 54035 2092293 ~ 2096188 (+) True CI01000000_02092375_02096188
CI01000000_02237986_02243555.mRNA mRNA downstream 199436 2237694 ~ 2243820 (+) True CI01000000_02237986_02243555
CI01000000_02334112_02352906.mRNA mRNA downstream 295297 2333555 ~ 2352912 (+) False CI01000000_02334112_02352906
CI01000000_02496792_02498535.mRNA mRNA downstream 458486 2496744 ~ 2498594 (+) True CI01000000_02496792_02498535
TU678 other upstream 129225 1815453 ~ 1908808 (+) False G579
TU531 other upstream 605179 1425121 ~ 1432854 (+) True G435
TU431 other upstream 1361096 671842 ~ 676937 (+) True G350
TU325 other upstream 1530961 503209 ~ 507072 (+) True G252
TU3086 other downstream 2415520 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 2687728 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8166573 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 8388965 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 8940231 10978489 ~ 10980872 (+) True G7018

Expression Profile