RNA id: TU1889


Basic Information

Item Value
RNA id TU1889
length 285
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1683
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3211823 ~ 3212955 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGACATTTCTCCTTGTAATTCTTCACATCTCTCCCATATTCGGTGCGGCATGATCCTCAGCTGTTCCTGTTAATGGAACATTCCGTGGATTTCACCACTGATTTGGGGAAAAGGTACAAACTGGAGCTCGCGCGAAGAATAAAGGCAGAATATGTCATTACTCTTCGCATCTCGCGCAAAACAACCACTCTCTGAATGCATCAGACTTTGGAGAAACCAATGCACTCGGTTGAACCCAGTATCATCCGCCGCCTATTTGCGTGATTTTATGACATACCCCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1887 lncRNA upstream 1164 3210830 ~ 3211436 (+) True G1682
TU1711 lncRNA upstream 63200 3124498 ~ 3149400 (+) True G1515
TU1719 lncRNA upstream 273572 2923688 ~ 2939028 (+) True G1523
TU1866 lncRNA upstream 333730 2878591 ~ 2878870 (+) True G1661
TU1850 lncRNA upstream 383987 2828371 ~ 2828613 (+) True G1645
TU1905 lncRNA downstream 28754 3241638 ~ 3241848 (+) True G1689
TU1906 lncRNA downstream 29719 3242603 ~ 3242897 (+) True G1690
TU1721 lncRNA downstream 52845 3265729 ~ 3267405 (+) True G1525
TU2377 lncRNA downstream 112421 3325305 ~ 3325615 (+) True G2124
TU2404 lncRNA downstream 159531 3372415 ~ 3372830 (+) True G2151
CI01000000_03184726_03189468.mRNA mRNA upstream 23132 3184680 ~ 3189468 (+) True CI01000000_03184726_03189468
CI01000000_03178021_03180730.mRNA mRNA upstream 31788 3178021 ~ 3180812 (+) True CI01000000_03178021_03180730
CI01000000_03163645_03170599.mRNA mRNA upstream 41589 3163157 ~ 3171011 (+) True CI01000000_03163645_03170599
CI01000000_03073311_03109669.mRNA mRNA upstream 102782 3072290 ~ 3109818 (+) True CI01000000_03073311_03109669
CI01000000_03044838_03057977.mRNA mRNA upstream 154030 3044512 ~ 3058570 (+) True CI01000000_03044838_03057977
CI01000000_03220166_03232503.mRNA mRNA downstream 7282 3220166 ~ 3232503 (+) True CI01000000_03220166_03232503
CI01000000_03232984_03233709.mRNA mRNA downstream 20100 3232984 ~ 3233989 (+) True CI01000000_03232984_03233709
CI01000000_03630643_03637287.mRNA mRNA downstream 417707 3630591 ~ 3638076 (+) True CI01000000_03630643_03637287
CI01000000_03724666_03729920.mRNA mRNA downstream 511216 3724100 ~ 3730043 (+) True CI01000000_03724666_03729920
CI01000000_03864153_03869858.mRNA mRNA downstream 651269 3864153 ~ 3870226 (+) False CI01000000_03864153_03869858
TU678 other upstream 1303792 1815453 ~ 1908808 (+) False G579
TU531 other upstream 1779746 1425121 ~ 1432854 (+) True G435
TU431 other upstream 2535663 671842 ~ 676937 (+) True G350
TU325 other upstream 2705528 503209 ~ 507072 (+) True G252
TU3086 other downstream 1240894 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 1513102 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 6991947 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 7214339 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 7765605 10978489 ~ 10980872 (+) True G7018

Expression Profile