RNA id: TU3086


Basic Information

Item Value
RNA id TU3086
length 455
RNA type TUCP
GC content 0.40
exon number 1
gene id G2774
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4453778 ~ 4454232 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAACCCCCTGGCTCTTAATGCATCGTATTTCCTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCGTTAATTGTCCTCAGTGTGAAAAGATGAATCTCAAAATCATACAGTCACTGCCAGAAAGGGTTCAAATATGCAAAAATGATCTGTCTCAGCTGCTCACTGTACCTAAACACACAAATGATTTCGAGAAAATTACTAGCAGTATGTGCACCACTTTCACTAGTACATTAGATACTGTTGCACCGATGAGATTAAAAAAGGTTAGAGAGAAAAATACTGTACCATGGTACAACAGTATTACTCACGCTATCAAAAGAGAAACTCGTAATCTAGAACGCAAATGGAGACAAACTCGTTTAGAGGTCTTCAGAATCGCATGGAAAGATAGCTCGTCCCGTTATAGAAAGACTCTAAAAGCAGCCAGGGCCGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3065 lncRNA upstream 28040 4425395 ~ 4425738 (+) True G2755
TU3061 lncRNA upstream 29824 4423716 ~ 4423954 (+) True G2752
TU2701 lncRNA upstream 252377 4201178 ~ 4201401 (+) True G2427
TU2694 lncRNA upstream 261424 4192124 ~ 4192354 (+) True G2420
TU2672 lncRNA upstream 305955 4144989 ~ 4147823 (+) True CI01000000_04138020_04144928
TU3088 lncRNA downstream 1760 4455992 ~ 4456314 (+) False G2776
TU3090 lncRNA downstream 1814 4456046 ~ 4456314 (+) True G2776
TU3095 lncRNA downstream 9307 4463539 ~ 4463768 (+) True G2780
TU3111 lncRNA downstream 22325 4476557 ~ 4476765 (+) True G2792
TU3112 lncRNA downstream 24753 4478985 ~ 4479194 (+) True G2793
CI01000000_04451252_04452143.mRNA mRNA upstream 767 4451130 ~ 4453011 (+) True CI01000000_04451252_04452143
CI01000000_04368179_04392483.mRNA mRNA upstream 60788 4367839 ~ 4392990 (+) True CI01000000_04368179_04392483
CI01000000_04355381_04356090.mRNA mRNA upstream 97635 4355381 ~ 4356143 (+) True CI01000000_04355381_04356090
CI01000000_04225109_04225608.mRNA mRNA upstream 227162 4225109 ~ 4226616 (+) True CI01000000_04225109_04225608
CI01000000_04165348_04197615.mRNA mRNA upstream 255957 4165285 ~ 4197821 (+) True CI01000000_04165348_04197615
CI01000000_04462428_04462831.mRNA mRNA downstream 8196 4462428 ~ 4463112 (+) True CI01000000_04462428_04462831
CI01000000_04547587_04562715.mRNA mRNA downstream 93355 4547587 ~ 4562837 (+) True CI01000000_04547587_04562715
CI01000000_04576065_04586515.mRNA mRNA downstream 121833 4576065 ~ 4586881 (+) True CI01000000_04576065_04586515
CI01000000_04661351_04667059.mRNA mRNA downstream 207119 4661351 ~ 4667087 (+) True CI01000000_04661351_04667059
CI01000000_04698746_04717749.mRNA mRNA downstream 243809 4698041 ~ 4718908 (+) True CI01000000_04698746_04717749
TU678 other upstream 2544970 1815453 ~ 1908808 (+) False G579
TU531 other upstream 3020924 1425121 ~ 1432854 (+) True G435
TU431 other upstream 3776841 671842 ~ 676937 (+) True G350
TU325 other upstream 3946706 503209 ~ 507072 (+) True G252
TU3177 other downstream 271754 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 5750599 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 5972991 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 6524257 10978489 ~ 10980872 (+) True G7018
TU7890 other downstream 6790225 11244457 ~ 11245633 (+) True G7153

Expression Profile