RNA id: TCONS_00012828


Basic Information

Item Value
RNA id TCONS_00012828
length 357
lncRNA type lincRNA
GC content 0.40
exon number 2
gene id XLOC_006644
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 26009497 ~ 26703804 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacagaattatcttCTGTTTGCATCATTTTTCTTTTAAGCATgtctcttctttttcttttcaggCTATCGGGTTCATCCAGCACATAAAACTCATCACCGAAAATGAATAGAAGCGGTTGGAGAAGAGACTGGAGATGTGAACTGTCCCTCTGGAACGAGCTGCCATTAAGTTTactaaaaatgtctgatggtttCGCCCAGACAGTTAGGAAAGCTGTGTCTGAACGGGATCCAAATCTCTGatgcCATGAACCCCTCCTAAATAGGATAATCCTGATGAAATGGGTCCGCAGACCCAGTTTGAAATgtgtcaacaacaacaaaatatgatCAATATGGTAAGTTCATAATTTTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013793 lncRNA downstream 332788 25846532 ~ 25853311 (-) True XLOC_006643
TCONS_00013792 lncRNA downstream 333843 25846532 ~ 25852256 (-) False XLOC_006643
TCONS_00012826 lncRNA downstream 358964 25825327 ~ 25827135 (-) True XLOC_006642
TCONS_00013791 lncRNA downstream 407284 25776389 ~ 25778815 (-) True XLOC_006640
TCONS_00012823 lncRNA downstream 412174 25769379 ~ 25773925 (-) True XLOC_006639
TCONS_00013800 lncRNA upstream 286741 26497110 ~ 26699993 (-) False XLOC_006644
TCONS_00013801 lncRNA upstream 322985 26533354 ~ 26544816 (-) True XLOC_006645
TCONS_00012830 lncRNA upstream 342432 26552801 ~ 26693071 (-) False XLOC_006644
TCONS_00013802 lncRNA upstream 342432 26552801 ~ 26699993 (-) False XLOC_006644
TCONS_00013803 lncRNA upstream 342432 26552801 ~ 26703804 (-) False XLOC_006644
TCONS_00012825 mRNA downstream 344025 25824345 ~ 25842074 (-) False XLOC_006642
TCONS_00012824 mRNA downstream 366274 25795511 ~ 25819825 (-) True XLOC_006641
TCONS_00012821 mRNA downstream 411916 25762908 ~ 25774183 (-) False XLOC_006639
TCONS_00012822 mRNA downstream 418889 25765474 ~ 25767210 (-) False XLOC_006639
TCONS_00012820 mRNA downstream 440951 25735137 ~ 25745148 (-) True XLOC_006638
TCONS_00012834 mRNA upstream 569635 26780004 ~ 26799244 (-) False XLOC_006647
TCONS_00012838 mRNA upstream 790025 27000394 ~ 27038407 (-) False XLOC_006648
TCONS_00012839 mRNA upstream 1122287 27332656 ~ 27354033 (-) False XLOC_006651
TCONS_00012840 mRNA upstream 1122297 27332666 ~ 27354003 (-) True XLOC_006651
TCONS_00012841 mRNA upstream 1168488 27378857 ~ 27388097 (-) False XLOC_006652
TCONS_00012810 other downstream 637485 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 655451 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 986874 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 988036 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012759 other downstream 1899709 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012832 other upstream 356697 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 1440810 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 1479791 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 1969065 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 2066529 28276898 ~ 28295414 (-) False XLOC_006661

Expression Profile

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