RNA id: TU3489


Basic Information

Item Value
RNA id TU3489
length 276
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G3129
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4972710 ~ 4972985 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTCCAGTGAAAGGAAATCTTAATGCTTCAACATACCAAGACATTTTGGACAATTTCATGCTCCCAACTTTGTGGGAACAGTTTGGGGATGGCCCCTTCCTGTTCCAACATGACTGCGTACCAGTGCACAAAGCAAGGTCCATAAAGACATGGATGAGCGAGTTTGGTGTGGAGGAACTTGACTGGCCTGCACAGAGTCCTGACTTCAACCCGATAGAACACCTTTGGGATGAATTAGAGCGGAGACTGCGAGCCAGGCCTTCTCGCCAACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3479 lncRNA downstream 8583 4963788 ~ 4964127 (-) True G3119
TU3431 lncRNA downstream 63304 4909126 ~ 4909406 (-) True G3072
TU3419 lncRNA downstream 89078 4883410 ~ 4883632 (-) True G3060
TU3391 lncRNA downstream 141976 4830511 ~ 4830734 (-) True G3034
TU3383 lncRNA downstream 156828 4815674 ~ 4815882 (-) True G3026
TU3820 lncRNA upstream 64599 5037584 ~ 5053933 (-) True G3426
TU3851 lncRNA upstream 170344 5143329 ~ 5143559 (-) True G3457
TU3857 lncRNA upstream 207522 5180507 ~ 5182548 (-) True G3462
TU3859 lncRNA upstream 209919 5182904 ~ 5183272 (-) True G3464
TU3860 lncRNA upstream 211237 5184222 ~ 5184594 (-) True G3465
CI01000000_04924131_04926561.mRNA mRNA downstream 45944 4924058 ~ 4926766 (-) True CI01000000_04924131_04926561
CI01000000_04728056_04730605.mRNA mRNA downstream 241939 4727845 ~ 4730771 (-) True CI01000000_04728056_04730605
CI01000000_04597720_04599733.mRNA mRNA downstream 372541 4597518 ~ 4600169 (-) True CI01000000_04597720_04599733
CI01000000_04589952_04595231.mRNA mRNA downstream 376929 4589952 ~ 4595781 (-) True CI01000000_04589952_04595231
CI01000000_04587327_04589208.mRNA mRNA downstream 383502 4586959 ~ 4589208 (-) True CI01000000_04587327_04589208
CI01000000_04986976_04998622.mRNA mRNA upstream 13724 4986709 ~ 4999019 (-) True CI01000000_04986976_04998622
CI01000000_05286804_05288152.mRNA mRNA upstream 313803 5286788 ~ 5288214 (-) True CI01000000_05286804_05288152
CI01000000_05311908_05314253.mRNA mRNA upstream 337756 5310741 ~ 5314256 (-) True CI01000000_05311908_05314253
CI01000000_05380329_05386853.mRNA mRNA upstream 407070 5380055 ~ 5386853 (-) True CI01000000_05380329_05386853
CI01000000_05409025_05413963.mRNA mRNA upstream 435254 5408239 ~ 5414411 (-) True CI01000000_05409025_05413963
TU3038 other downstream 582558 4386383 ~ 4390152 (-) True G2730
TU2831 other downstream 891593 4078121 ~ 4081117 (-) True CI01000000_04079738_04081018
TU2763 other downstream 1399156 3570066 ~ 3573554 (-) True G2484
TU2794 other downstream 1405619 3566699 ~ 3567091 (-) True CI01000000_03564077_03564373
TU2257 other downstream 1725995 3245134 ~ 3246715 (-) True CI01000000_03245643_03246684
TU3917 other upstream 491073 5465454 ~ 5465799 (-) True G3519
TU4058 other upstream 567478 5540463 ~ 5540881 (-) True G3650
TU4125 other upstream 1027422 6000407 ~ 6000769 (-) True G3716
TU4363 other upstream 1184028 6157013 ~ 6403525 (-) False G3931
TU8769 other upstream 5431343 10404328 ~ 10414513 (-) True G7948

Expression Profile