RNA id: TCONS_00013804


Basic Information

Item Value
RNA id TCONS_00013804
length 520
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id XLOC_006644
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 26009497 ~ 26703804 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGTGTGCCAACAAGTTTGCCAAACGCCAATAAACGCATGCAGAAGAAGaataatttaactaattaattcCTGTTAAACGGGGGACAAATCATTGCTTGTTTGTCAGCTGTGTAACTACTTCACCAGAATTGCTCAACATCTtgtaaaattttgcaacaaaaaaTAAGAAGTTTAAGATCAGTCATTGTTGATAAGTGTTGCAGGAAAGTCAAGATTAACAGACGAGTGGGAAATCAAAGACTGGATGAACGCTGGGGAAACTGACGGAGAGGTGAGCTCTGGAAAGGAGGAAGGATACTTCCTGTTCCTACTGGAGTGACCCGCAGGTCTGAGGAGGAGTGAGGGAGTGAGAGAGAAGGCGGAGGAAGCGAGCTGACCTTTACCTTGTTACCTTGGCTTGAATTTAAAGCATTTGATATTCGGCAGCATTAAAGAAATCTCGTCGTGCTCTGTTGGTTGTGGACCGTCTTATCGTCCGCCACACTCGGCAGATACTGTGTCAGTGAATGAGGTGCAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013801 lncRNA downstream 103590 26533354 ~ 26544816 (-) True XLOC_006645
TCONS_00012828 lncRNA downstream 438037 26186099 ~ 26210369 (-) False XLOC_006644
TCONS_00013482 lncRNA downstream 438037 26205821 ~ 26210369 (-) False XLOC_006644
TCONS_00012827 lncRNA downstream 462180 26051785 ~ 26186226 (-) False XLOC_006644
TCONS_00013793 lncRNA downstream 795095 25846532 ~ 25853311 (-) True XLOC_006643
TCONS_00012835 lncRNA upstream 76764 26780568 ~ 26786084 (-) False XLOC_006647
TCONS_00012836 lncRNA upstream 93592 26797396 ~ 26799173 (-) True XLOC_006647
TCONS_00012837 lncRNA upstream 296590 27000394 ~ 27038407 (-) True XLOC_006648
TCONS_00013805 lncRNA upstream 523557 27227361 ~ 27227750 (-) True XLOC_006649
TCONS_00013806 lncRNA upstream 567534 27271338 ~ 27277709 (-) True XLOC_006650
TCONS_00012825 mRNA downstream 806332 25824345 ~ 25842074 (-) False XLOC_006642
TCONS_00012824 mRNA downstream 828581 25795511 ~ 25819825 (-) True XLOC_006641
TCONS_00012821 mRNA downstream 874223 25762908 ~ 25774183 (-) False XLOC_006639
TCONS_00012822 mRNA downstream 881196 25765474 ~ 25767210 (-) False XLOC_006639
TCONS_00012820 mRNA downstream 903258 25735137 ~ 25745148 (-) True XLOC_006638
TCONS_00012834 mRNA upstream 76200 26780004 ~ 26799244 (-) False XLOC_006647
TCONS_00012838 mRNA upstream 296590 27000394 ~ 27038407 (-) False XLOC_006648
TCONS_00012839 mRNA upstream 628852 27332656 ~ 27354033 (-) False XLOC_006651
TCONS_00012840 mRNA upstream 628862 27332666 ~ 27354003 (-) True XLOC_006651
TCONS_00012841 mRNA upstream 675053 27378857 ~ 27388097 (-) False XLOC_006652
TCONS_00012832 other downstream 81222 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012810 other downstream 1099792 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 1117758 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 1449181 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other downstream 1450343 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012849 other upstream 947375 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 986356 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 1475630 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 1573094 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012862 other upstream 1582058 28285862 ~ 28417158 (-) True XLOC_006661

Expression Profile

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