RNA id: TU4483


Basic Information

Item Value
RNA id TU4483
length 207
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G4045
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 6568855 ~ 6569061 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCAATCTTTTTTTTTTTCCACACATCCTCAGTGTCAGTGAAATAACTTAATATGATAGGTTCAATCCAGAGAGGCCTGCTGTAACACTAGCTGAGTATTACTTTCACATCTCAGCTTGAGAGCCATGAAATGGCTTCCTTCTTGCCTTCCAGCTTTACAATCTAACATTACACCAGGTCCTGGAACACAGTCCCGTGGGGCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4452 lncRNA downstream 52925 6515544 ~ 6515930 (-) True G4014
TU4450 lncRNA downstream 54870 6513656 ~ 6513985 (-) True G4012
TU4362 lncRNA downstream 165330 6224138 ~ 6403525 (-) False G3931
TU4366 lncRNA downstream 283603 6266967 ~ 6285252 (-) True G3931
TU4371 lncRNA downstream 345598 6188521 ~ 6223257 (-) True G3934
TU4983 lncRNA upstream 30073 6599134 ~ 6600505 (-) True G4525
TU5069 lncRNA upstream 113346 6682407 ~ 6682677 (-) True G4600
TU5077 lncRNA upstream 122149 6691210 ~ 6691531 (-) True G4608
TU5078 lncRNA upstream 122857 6691918 ~ 6692243 (-) True G4609
TU5096 lncRNA upstream 154397 6723458 ~ 6724062 (-) True G4627
CI01000000_06440604_06446663.mRNA mRNA downstream 121969 6440290 ~ 6446886 (-) True CI01000000_06440604_06446663
CI01000000_06129260_06131083.mRNA mRNA downstream 436740 6128253 ~ 6132115 (-) True CI01000000_06129260_06131083
CI01000000_06015043_06020725.mRNA mRNA downstream 548130 6014844 ~ 6020725 (-) True CI01000000_06015043_06020725
CI01000000_06003835_06013643.mRNA mRNA downstream 555212 6003625 ~ 6013643 (-) True CI01000000_06003835_06013643
CI01000000_05895517_05933395.mRNA mRNA downstream 635460 5895517 ~ 5933395 (-) True CI01000000_05895517_05933395
CI01000000_06605375_06610684.mRNA mRNA upstream 36243 6605304 ~ 6610684 (-) True CI01000000_06605375_06610684
CI01000000_06703991_06720016.mRNA mRNA upstream 134585 6703646 ~ 6720061 (-) True CI01000000_06703991_06720016
CI01000000_06874082_06880482.mRNA mRNA upstream 304768 6873829 ~ 6882192 (-) True CI01000000_06874082_06880482
CI01000000_07082778_07091429.mRNA mRNA upstream 513144 7082205 ~ 7091655 (-) True CI01000000_07082778_07091429
CI01000000_07270096_07275294.mRNA mRNA upstream 701001 7270062 ~ 7275879 (-) True CI01000000_07270096_07275294
TU4363 other downstream 165330 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 568086 6000407 ~ 6000769 (-) True G3716
TU4058 other downstream 1027974 5540463 ~ 5540881 (-) True G3650
TU3917 other downstream 1102339 5465454 ~ 5465799 (-) True G3519
TU3038 other downstream 2178703 4386383 ~ 4390152 (-) True G2730
TU8769 other upstream 3835267 10404328 ~ 10414513 (-) True G7948
TU8770 other upstream 4255350 10827450 ~ 10827595 (-) True G7949
TU8948 other upstream 4471208 11040269 ~ 11040909 (-) True G8125
TU9592 other upstream 6716263 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 6735215 13304276 ~ 13311429 (-) True G8699

Expression Profile